Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS03575

Experiment: p-Coumaric (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03565 and PFLU_RS03570 are separated by 0 nucleotidesPFLU_RS03570 and PFLU_RS03575 are separated by 11 nucleotidesPFLU_RS03575 and PFLU_RS03580 overlap by 4 nucleotides PFLU_RS03565: PFLU_RS03565 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 822,111 to 823,208 _RS03565 PFLU_RS03570: PFLU_RS03570 - hypothetical protein, at 823,209 to 823,559 _RS03570 PFLU_RS03575: PFLU_RS03575 - hypothetical protein, at 823,571 to 823,774 _RS03575 PFLU_RS03580: PFLU_RS03580 - EscC/YscC/HrcC family type III secretion system outer membrane ring protein, at 823,771 to 825,912 _RS03580 Position (kb) 823 824Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 822.579 kb on + strand, within PFLU_RS03565at 822.579 kb on + strand, within PFLU_RS03565at 822.579 kb on + strand, within PFLU_RS03565at 822.579 kb on + strand, within PFLU_RS03565at 822.579 kb on + strand, within PFLU_RS03565at 822.579 kb on + strand, within PFLU_RS03565at 822.579 kb on + strand, within PFLU_RS03565at 822.579 kb on + strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.580 kb on - strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.583 kb on + strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.584 kb on - strand, within PFLU_RS03565at 822.642 kb on + strand, within PFLU_RS03565at 822.642 kb on + strand, within PFLU_RS03565at 822.642 kb on + strand, within PFLU_RS03565at 822.643 kb on - strand, within PFLU_RS03565at 822.643 kb on - strand, within PFLU_RS03565at 822.643 kb on - strand, within PFLU_RS03565at 822.643 kb on - strand, within PFLU_RS03565at 822.643 kb on - strand, within PFLU_RS03565at 822.789 kb on + strand, within PFLU_RS03565at 822.789 kb on + strand, within PFLU_RS03565at 822.790 kb on - strand, within PFLU_RS03565at 822.790 kb on - strand, within PFLU_RS03565at 822.790 kb on - strand, within PFLU_RS03565at 822.939 kb on + strand, within PFLU_RS03565at 822.939 kb on + strand, within PFLU_RS03565at 822.939 kb on + strand, within PFLU_RS03565at 822.954 kb on - strand, within PFLU_RS03565at 823.054 kb on + strand, within PFLU_RS03565at 823.054 kb on + strand, within PFLU_RS03565at 823.055 kb on - strand, within PFLU_RS03565at 823.055 kb on - strand, within PFLU_RS03565at 823.055 kb on - strand, within PFLU_RS03565at 823.055 kb on - strand, within PFLU_RS03565at 823.055 kb on - strand, within PFLU_RS03565at 823.074 kb on + strand, within PFLU_RS03565at 823.075 kb on - strand, within PFLU_RS03565at 823.075 kb on - strand, within PFLU_RS03565at 823.075 kb on - strand, within PFLU_RS03565at 823.135 kb on - strandat 823.166 kb on + strandat 823.167 kb on - strandat 823.339 kb on + strand, within PFLU_RS03570at 823.340 kb on - strand, within PFLU_RS03570at 823.473 kb on + strand, within PFLU_RS03570at 823.474 kb on - strand, within PFLU_RS03570at 823.536 kb on + strandat 823.537 kb on - strandat 823.537 kb on - strandat 823.561 kb on + strandat 823.561 kb on + strandat 823.562 kb on - strandat 823.562 kb on - strandat 823.702 kb on + strand, within PFLU_RS03575at 823.702 kb on + strand, within PFLU_RS03575at 823.703 kb on - strand, within PFLU_RS03575at 823.703 kb on - strand, within PFLU_RS03575at 823.760 kb on + strandat 823.760 kb on + strandat 823.760 kb on + strandat 823.760 kb on + strandat 823.761 kb on - strandat 823.761 kb on - strandat 823.761 kb on - strandat 823.761 kb on - strandat 823.761 kb on - strandat 823.761 kb on - strandat 823.761 kb on - strandat 823.761 kb on - strandat 823.761 kb on - strandat 823.857 kb on + strandat 823.857 kb on + strandat 823.858 kb on - strandat 823.982 kb on - strandat 823.982 kb on - strandat 824.000 kb on + strand, within PFLU_RS03580at 824.000 kb on + strand, within PFLU_RS03580at 824.000 kb on + strand, within PFLU_RS03580at 824.000 kb on + strand, within PFLU_RS03580at 824.000 kb on + strand, within PFLU_RS03580at 824.001 kb on - strand, within PFLU_RS03580at 824.001 kb on - strand, within PFLU_RS03580at 824.001 kb on - strand, within PFLU_RS03580at 824.015 kb on + strand, within PFLU_RS03580at 824.128 kb on + strand, within PFLU_RS03580at 824.218 kb on + strand, within PFLU_RS03580at 824.218 kb on + strand, within PFLU_RS03580at 824.218 kb on + strand, within PFLU_RS03580at 824.218 kb on + strand, within PFLU_RS03580at 824.219 kb on - strand, within PFLU_RS03580at 824.219 kb on - strand, within PFLU_RS03580at 824.219 kb on - strand, within PFLU_RS03580at 824.219 kb on - strand, within PFLU_RS03580at 824.246 kb on + strand, within PFLU_RS03580at 824.426 kb on - strand, within PFLU_RS03580at 824.426 kb on - strand, within PFLU_RS03580at 824.526 kb on + strand, within PFLU_RS03580at 824.527 kb on - strand, within PFLU_RS03580at 824.636 kb on + strand, within PFLU_RS03580at 824.636 kb on + strand, within PFLU_RS03580at 824.637 kb on - strand, within PFLU_RS03580at 824.637 kb on - strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.657 kb on + strand, within PFLU_RS03580at 824.658 kb on - strand, within PFLU_RS03580at 824.658 kb on - strand, within PFLU_RS03580at 824.658 kb on - strand, within PFLU_RS03580at 824.658 kb on - strand, within PFLU_RS03580at 824.658 kb on - strand, within PFLU_RS03580at 824.658 kb on - strand, within PFLU_RS03580at 824.658 kb on - strand, within PFLU_RS03580at 824.658 kb on - strand, within PFLU_RS03580at 824.658 kb on - strand, within PFLU_RS03580

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Per-strain Table

Position Strand Gene LocusTag Fraction p-Coumaric (C) 5 mM
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822,579 + PFLU_RS03565 0.43 -2.3
822,579 + PFLU_RS03565 0.43 -2.4
822,579 + PFLU_RS03565 0.43 +0.6
822,579 + PFLU_RS03565 0.43 -0.8
822,579 + PFLU_RS03565 0.43 +1.3
822,579 + PFLU_RS03565 0.43 -0.3
822,579 + PFLU_RS03565 0.43 -0.2
822,579 + PFLU_RS03565 0.43 -0.5
822,580 - PFLU_RS03565 0.43 -0.4
822,580 - PFLU_RS03565 0.43 -0.4
822,580 - PFLU_RS03565 0.43 +0.1
822,580 - PFLU_RS03565 0.43 -1.5
822,580 - PFLU_RS03565 0.43 -0.0
822,580 - PFLU_RS03565 0.43 -1.3
822,580 - PFLU_RS03565 0.43 +1.4
822,580 - PFLU_RS03565 0.43 +0.3
822,580 - PFLU_RS03565 0.43 +1.0
822,580 - PFLU_RS03565 0.43 +2.7
822,580 - PFLU_RS03565 0.43 -2.6
822,580 - PFLU_RS03565 0.43 -1.8
822,583 + PFLU_RS03565 0.43 +0.4
822,583 + PFLU_RS03565 0.43 -2.2
822,583 + PFLU_RS03565 0.43 -2.4
822,583 + PFLU_RS03565 0.43 +1.0
822,583 + PFLU_RS03565 0.43 -0.7
822,583 + PFLU_RS03565 0.43 -1.4
822,583 + PFLU_RS03565 0.43 -2.7
822,583 + PFLU_RS03565 0.43 -0.8
822,583 + PFLU_RS03565 0.43 -2.1
822,583 + PFLU_RS03565 0.43 -0.2
822,583 + PFLU_RS03565 0.43 +0.8
822,583 + PFLU_RS03565 0.43 -1.5
822,583 + PFLU_RS03565 0.43 -1.0
822,583 + PFLU_RS03565 0.43 +1.4
822,583 + PFLU_RS03565 0.43 -0.7
822,584 - PFLU_RS03565 0.43 -1.8
822,584 - PFLU_RS03565 0.43 +0.6
822,584 - PFLU_RS03565 0.43 -1.6
822,584 - PFLU_RS03565 0.43 -0.3
822,584 - PFLU_RS03565 0.43 -0.4
822,584 - PFLU_RS03565 0.43 -1.8
822,584 - PFLU_RS03565 0.43 +0.4
822,584 - PFLU_RS03565 0.43 -1.0
822,584 - PFLU_RS03565 0.43 +1.6
822,584 - PFLU_RS03565 0.43 -1.0
822,584 - PFLU_RS03565 0.43 -0.6
822,584 - PFLU_RS03565 0.43 +0.7
822,584 - PFLU_RS03565 0.43 -0.2
822,584 - PFLU_RS03565 0.43 +0.9
822,584 - PFLU_RS03565 0.43 +1.0
822,584 - PFLU_RS03565 0.43 -0.0
822,584 - PFLU_RS03565 0.43 -2.1
822,584 - PFLU_RS03565 0.43 -1.6
822,642 + PFLU_RS03565 0.48 +1.9
822,642 + PFLU_RS03565 0.48 -0.2
822,642 + PFLU_RS03565 0.48 +4.7
822,643 - PFLU_RS03565 0.48 -1.7
822,643 - PFLU_RS03565 0.48 -1.6
822,643 - PFLU_RS03565 0.48 +0.4
822,643 - PFLU_RS03565 0.48 -0.0
822,643 - PFLU_RS03565 0.48 -0.7
822,789 + PFLU_RS03565 0.62 +0.9
822,789 + PFLU_RS03565 0.62 +1.4
822,790 - PFLU_RS03565 0.62 +1.4
822,790 - PFLU_RS03565 0.62 +0.8
822,790 - PFLU_RS03565 0.62 -0.0
822,939 + PFLU_RS03565 0.75 +1.4
822,939 + PFLU_RS03565 0.75 -0.0
822,939 + PFLU_RS03565 0.75 +2.4
822,954 - PFLU_RS03565 0.77 -0.3
823,054 + PFLU_RS03565 0.86 -0.1
823,054 + PFLU_RS03565 0.86 -0.8
823,055 - PFLU_RS03565 0.86 -0.2
823,055 - PFLU_RS03565 0.86 -1.0
823,055 - PFLU_RS03565 0.86 +0.5
823,055 - PFLU_RS03565 0.86 +0.3
823,055 - PFLU_RS03565 0.86 +0.4
823,074 + PFLU_RS03565 0.88 +0.6
823,075 - PFLU_RS03565 0.88 +1.4
823,075 - PFLU_RS03565 0.88 +0.1
823,075 - PFLU_RS03565 0.88 +1.0
823,135 - +2.8
823,166 + +1.9
823,167 - -0.6
823,339 + PFLU_RS03570 0.37 +0.8
823,340 - PFLU_RS03570 0.37 -1.4
823,473 + PFLU_RS03570 0.75 +0.8
823,474 - PFLU_RS03570 0.75 +1.1
823,536 + +1.4
823,537 - +0.7
823,537 - -2.4
823,561 + -1.9
823,561 + +0.2
823,562 - -0.5
823,562 - +1.7
823,702 + PFLU_RS03575 0.64 -1.5
823,702 + PFLU_RS03575 0.64 -2.1
823,703 - PFLU_RS03575 0.65 -3.0
823,703 - PFLU_RS03575 0.65 +1.4
823,760 + -1.6
823,760 + +0.9
823,760 + +0.9
823,760 + -2.3
823,761 - +0.3
823,761 - +1.9
823,761 - +0.5
823,761 - -1.7
823,761 - -1.3
823,761 - +2.7
823,761 - -1.7
823,761 - +1.3
823,761 - +3.0
823,857 + -0.4
823,857 + +0.9
823,858 - -2.3
823,982 - +0.7
823,982 - -0.0
824,000 + PFLU_RS03580 0.11 +0.9
824,000 + PFLU_RS03580 0.11 +0.4
824,000 + PFLU_RS03580 0.11 -1.3
824,000 + PFLU_RS03580 0.11 -2.2
824,000 + PFLU_RS03580 0.11 -1.3
824,001 - PFLU_RS03580 0.11 -2.6
824,001 - PFLU_RS03580 0.11 -0.1
824,001 - PFLU_RS03580 0.11 -0.7
824,015 + PFLU_RS03580 0.11 -0.6
824,128 + PFLU_RS03580 0.17 -0.9
824,218 + PFLU_RS03580 0.21 -2.2
824,218 + PFLU_RS03580 0.21 +2.0
824,218 + PFLU_RS03580 0.21 -0.4
824,218 + PFLU_RS03580 0.21 -1.4
824,219 - PFLU_RS03580 0.21 -0.3
824,219 - PFLU_RS03580 0.21 -0.6
824,219 - PFLU_RS03580 0.21 +0.6
824,219 - PFLU_RS03580 0.21 -1.8
824,246 + PFLU_RS03580 0.22 +0.4
824,426 - PFLU_RS03580 0.31 -0.4
824,426 - PFLU_RS03580 0.31 -1.0
824,526 + PFLU_RS03580 0.35 +0.9
824,527 - PFLU_RS03580 0.35 +0.4
824,636 + PFLU_RS03580 0.40 -1.1
824,636 + PFLU_RS03580 0.40 +0.7
824,637 - PFLU_RS03580 0.40 +0.9
824,637 - PFLU_RS03580 0.40 +2.3
824,657 + PFLU_RS03580 0.41 +1.7
824,657 + PFLU_RS03580 0.41 +0.6
824,657 + PFLU_RS03580 0.41 -1.1
824,657 + PFLU_RS03580 0.41 -1.0
824,657 + PFLU_RS03580 0.41 -2.1
824,657 + PFLU_RS03580 0.41 -0.7
824,657 + PFLU_RS03580 0.41 -1.1
824,657 + PFLU_RS03580 0.41 +0.9
824,657 + PFLU_RS03580 0.41 +0.1
824,657 + PFLU_RS03580 0.41 +0.4
824,657 + PFLU_RS03580 0.41 +0.6
824,657 + PFLU_RS03580 0.41 +0.5
824,657 + PFLU_RS03580 0.41 +1.9
824,657 + PFLU_RS03580 0.41 -0.7
824,657 + PFLU_RS03580 0.41 -3.0
824,657 + PFLU_RS03580 0.41 +0.0
824,658 - PFLU_RS03580 0.41 -0.6
824,658 - PFLU_RS03580 0.41 -0.9
824,658 - PFLU_RS03580 0.41 +1.9
824,658 - PFLU_RS03580 0.41 +1.4
824,658 - PFLU_RS03580 0.41 -2.6
824,658 - PFLU_RS03580 0.41 -1.5
824,658 - PFLU_RS03580 0.41 -1.5
824,658 - PFLU_RS03580 0.41 -0.6
824,658 - PFLU_RS03580 0.41 +1.4

Or see this region's nucleotide sequence