Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17725

Experiment: RCH2_defined_1percent_glucose; no stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17720 and BWI76_RS17725 are separated by 92 nucleotidesBWI76_RS17725 and BWI76_RS17730 are separated by 16 nucleotides BWI76_RS17720: BWI76_RS17720 - muramoyltetrapeptide carboxypeptidase, at 3,683,728 to 3,684,642 _RS17720 BWI76_RS17725: BWI76_RS17725 - K+/H+ antiporter, at 3,684,735 to 3,686,468 _RS17725 BWI76_RS17730: BWI76_RS17730 - alanine racemase, at 3,686,485 to 3,687,555 _RS17730 Position (kb) 3684 3685 3686 3687Strain fitness (log2 ratio) -2 -1 0 1 2at 3683.846 kb on - strand, within BWI76_RS17720at 3684.582 kb on + strandat 3684.760 kb on - strandat 3684.819 kb on + strandat 3684.853 kb on + strandat 3684.985 kb on - strand, within BWI76_RS17725at 3685.050 kb on - strand, within BWI76_RS17725at 3685.055 kb on - strand, within BWI76_RS17725at 3685.099 kb on - strand, within BWI76_RS17725at 3685.246 kb on + strand, within BWI76_RS17725at 3685.485 kb on - strand, within BWI76_RS17725at 3685.714 kb on + strand, within BWI76_RS17725at 3685.722 kb on - strand, within BWI76_RS17725at 3685.752 kb on + strand, within BWI76_RS17725at 3685.856 kb on - strand, within BWI76_RS17725at 3686.125 kb on - strand, within BWI76_RS17725

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose; no stress
remove
3,683,846 - BWI76_RS17720 0.13 -0.4
3,684,582 + +0.3
3,684,760 - +0.4
3,684,819 + -0.4
3,684,853 + +0.1
3,684,985 - BWI76_RS17725 0.14 -0.2
3,685,050 - BWI76_RS17725 0.18 +0.7
3,685,055 - BWI76_RS17725 0.18 -0.4
3,685,099 - BWI76_RS17725 0.21 -2.0
3,685,246 + BWI76_RS17725 0.29 +1.2
3,685,485 - BWI76_RS17725 0.43 +1.4
3,685,714 + BWI76_RS17725 0.56 +0.6
3,685,722 - BWI76_RS17725 0.57 +1.8
3,685,752 + BWI76_RS17725 0.59 +0.0
3,685,856 - BWI76_RS17725 0.65 +0.8
3,686,125 - BWI76_RS17725 0.80 +0.3

Or see this region's nucleotide sequence