Experiment: RCH2_defined_1percent_glucose; no stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16680 and BWI76_RS16685 are separated by 42 nucleotides BWI76_RS16685 and BWI76_RS16690 overlap by 1 nucleotides BWI76_RS16690 and BWI76_RS16695 overlap by 4 nucleotides
BWI76_RS16680: BWI76_RS16680 - ABC transporter substrate-binding protein, at 3,451,896 to 3,453,599
_RS16680
BWI76_RS16685: BWI76_RS16685 - peptide ABC transporter permease, at 3,453,642 to 3,454,601
_RS16685
BWI76_RS16690: BWI76_RS16690 - peptide ABC transporter permease, at 3,454,601 to 3,455,548
_RS16690
BWI76_RS16695: BWI76_RS16695 - dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein, at 3,455,545 to 3,456,525
_RS16695
Position (kb)
3453
3454
3455 Strain fitness (log2 ratio)
-1
0
1
2 at 3452.687 kb on + strand, within BWI76_RS16680 at 3452.963 kb on + strand, within BWI76_RS16680 at 3453.141 kb on - strand, within BWI76_RS16680 at 3453.176 kb on + strand, within BWI76_RS16680 at 3453.767 kb on - strand, within BWI76_RS16685 at 3454.365 kb on - strand, within BWI76_RS16685 at 3454.377 kb on - strand at 3454.628 kb on - strand at 3454.952 kb on - strand, within BWI76_RS16690 at 3455.202 kb on + strand, within BWI76_RS16690 at 3455.311 kb on + strand, within BWI76_RS16690
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose; no stress remove 3,452,687 + BWI76_RS16680 0.46 -0.5 3,452,963 + BWI76_RS16680 0.63 -0.3 3,453,141 - BWI76_RS16680 0.73 +1.1 3,453,176 + BWI76_RS16680 0.75 +0.2 3,453,767 - BWI76_RS16685 0.13 +0.4 3,454,365 - BWI76_RS16685 0.75 +0.6 3,454,377 - +2.1 3,454,628 - -0.2 3,454,952 - BWI76_RS16690 0.37 +0.3 3,455,202 + BWI76_RS16690 0.63 +0.5 3,455,311 + BWI76_RS16690 0.75 +0.0
Or see this region's nucleotide sequence