Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2759

Experiment: Zinc 0.12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2756 and Psest_2757 are separated by 138 nucleotidesPsest_2757 and Psest_2758 are separated by 132 nucleotidesPsest_2758 and Psest_2759 are separated by 62 nucleotidesPsest_2759 and Psest_2760 are separated by 19 nucleotides Psest_2756: Psest_2756 - hypothetical protein, at 2,945,799 to 2,945,921 _2756 Psest_2757: Psest_2757 - hypothetical protein, at 2,946,060 to 2,946,209 _2757 Psest_2758: Psest_2758 - Predicted transcriptional regulators, at 2,946,342 to 2,946,743 _2758 Psest_2759: Psest_2759 - Co/Zn/Cd efflux system component, at 2,946,806 to 2,947,453 _2759 Psest_2760: Psest_2760 - hypothetical protein, at 2,947,473 to 2,949,416 _2760 Position (kb) 2946 2947 2948Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2945.901 kb on + strand, within Psest_2756at 2945.901 kb on + strand, within Psest_2756at 2945.961 kb on - strandat 2945.987 kb on + strandat 2946.152 kb on - strand, within Psest_2757at 2946.161 kb on - strand, within Psest_2757at 2946.292 kb on + strandat 2946.292 kb on + strandat 2946.293 kb on - strandat 2946.293 kb on - strandat 2946.343 kb on + strandat 2946.343 kb on + strandat 2946.344 kb on - strandat 2946.487 kb on - strand, within Psest_2758at 2946.679 kb on + strand, within Psest_2758at 2946.679 kb on + strand, within Psest_2758at 2946.679 kb on + strand, within Psest_2758at 2946.682 kb on + strand, within Psest_2758at 2946.757 kb on - strandat 2946.992 kb on + strand, within Psest_2759at 2947.083 kb on + strand, within Psest_2759at 2947.182 kb on + strand, within Psest_2759at 2947.182 kb on + strand, within Psest_2759at 2947.183 kb on - strand, within Psest_2759at 2947.183 kb on - strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.202 kb on + strand, within Psest_2759at 2947.203 kb on - strand, within Psest_2759at 2947.203 kb on - strand, within Psest_2759at 2947.203 kb on - strand, within Psest_2759at 2947.245 kb on + strand, within Psest_2759at 2947.246 kb on - strand, within Psest_2759at 2947.475 kb on - strandat 2947.543 kb on + strandat 2947.544 kb on - strandat 2947.822 kb on + strand, within Psest_2760at 2947.823 kb on - strand, within Psest_2760at 2947.834 kb on + strand, within Psest_2760at 2947.861 kb on + strand, within Psest_2760at 2947.861 kb on + strand, within Psest_2760at 2947.861 kb on + strand, within Psest_2760at 2947.861 kb on + strand, within Psest_2760at 2947.861 kb on + strand, within Psest_2760at 2947.861 kb on + strand, within Psest_2760at 2947.861 kb on + strand, within Psest_2760at 2947.861 kb on + strand, within Psest_2760at 2947.861 kb on + strand, within Psest_2760at 2947.861 kb on + strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.862 kb on - strand, within Psest_2760at 2947.892 kb on + strand, within Psest_2760at 2947.893 kb on - strand, within Psest_2760at 2947.893 kb on - strand, within Psest_2760at 2948.338 kb on + strand, within Psest_2760

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.12 mM
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2,945,901 + Psest_2756 0.83 -0.5
2,945,901 + Psest_2756 0.83 -2.2
2,945,961 - +0.9
2,945,987 + -0.0
2,946,152 - Psest_2757 0.61 +1.2
2,946,161 - Psest_2757 0.67 -0.0
2,946,292 + +0.2
2,946,292 + -0.3
2,946,293 - +0.2
2,946,293 - -0.1
2,946,343 + +0.9
2,946,343 + +0.8
2,946,344 - +1.0
2,946,487 - Psest_2758 0.36 +0.3
2,946,679 + Psest_2758 0.84 +0.1
2,946,679 + Psest_2758 0.84 -0.4
2,946,679 + Psest_2758 0.84 -1.1
2,946,682 + Psest_2758 0.85 +0.9
2,946,757 - -3.2
2,946,992 + Psest_2759 0.29 -1.9
2,947,083 + Psest_2759 0.43 -0.7
2,947,182 + Psest_2759 0.58 -1.4
2,947,182 + Psest_2759 0.58 -1.7
2,947,183 - Psest_2759 0.58 -1.9
2,947,183 - Psest_2759 0.58 -2.6
2,947,202 + Psest_2759 0.61 -3.4
2,947,202 + Psest_2759 0.61 -2.8
2,947,202 + Psest_2759 0.61 -3.8
2,947,202 + Psest_2759 0.61 -3.1
2,947,202 + Psest_2759 0.61 -1.8
2,947,202 + Psest_2759 0.61 -2.2
2,947,203 - Psest_2759 0.61 -2.8
2,947,203 - Psest_2759 0.61 -2.6
2,947,203 - Psest_2759 0.61 -3.2
2,947,245 + Psest_2759 0.68 -3.2
2,947,246 - Psest_2759 0.68 -0.5
2,947,475 - +0.6
2,947,543 + -0.8
2,947,544 - -1.6
2,947,822 + Psest_2760 0.18 +0.5
2,947,823 - Psest_2760 0.18 -0.2
2,947,834 + Psest_2760 0.19 +0.1
2,947,861 + Psest_2760 0.20 -0.5
2,947,861 + Psest_2760 0.20 -0.9
2,947,861 + Psest_2760 0.20 +0.8
2,947,861 + Psest_2760 0.20 -0.1
2,947,861 + Psest_2760 0.20 -1.9
2,947,861 + Psest_2760 0.20 -0.1
2,947,861 + Psest_2760 0.20 -1.2
2,947,861 + Psest_2760 0.20 +1.0
2,947,861 + Psest_2760 0.20 -0.6
2,947,861 + Psest_2760 0.20 +0.8
2,947,862 - Psest_2760 0.20 -2.6
2,947,862 - Psest_2760 0.20 -2.7
2,947,862 - Psest_2760 0.20 +1.5
2,947,862 - Psest_2760 0.20 -0.7
2,947,862 - Psest_2760 0.20 +1.7
2,947,862 - Psest_2760 0.20 -0.2
2,947,862 - Psest_2760 0.20 -1.3
2,947,862 - Psest_2760 0.20 +2.0
2,947,862 - Psest_2760 0.20 -0.8
2,947,862 - Psest_2760 0.20 +1.2
2,947,862 - Psest_2760 0.20 -1.0
2,947,862 - Psest_2760 0.20 +0.6
2,947,862 - Psest_2760 0.20 -0.4
2,947,892 + Psest_2760 0.22 +0.4
2,947,893 - Psest_2760 0.22 -0.1
2,947,893 - Psest_2760 0.22 +0.6
2,948,338 + Psest_2760 0.44 +1.6

Or see this region's nucleotide sequence