Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2264

Experiment: Zinc 0.12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2263 and Psest_2264 overlap by 4 nucleotidesPsest_2264 and Psest_2265 overlap by 4 nucleotides Psest_2263: Psest_2263 - heavy metal efflux pump (cobalt-zinc-cadmium), at 2,409,104 to 2,412,226 _2263 Psest_2264: Psest_2264 - RND family efflux transporter, MFP subunit, at 2,412,223 to 2,413,710 _2264 Psest_2265: Psest_2265 - Outer membrane protein, at 2,413,707 to 2,414,960 _2265 Position (kb) 2412 2413 2414Strain fitness (log2 ratio) -2 -1 0 1 2at 2411.254 kb on - strand, within Psest_2263at 2411.254 kb on - strand, within Psest_2263at 2411.541 kb on + strand, within Psest_2263at 2411.541 kb on + strand, within Psest_2263at 2411.541 kb on + strand, within Psest_2263at 2411.541 kb on + strand, within Psest_2263at 2411.541 kb on + strand, within Psest_2263at 2411.541 kb on + strand, within Psest_2263at 2411.541 kb on + strand, within Psest_2263at 2411.541 kb on + strand, within Psest_2263at 2411.541 kb on + strand, within Psest_2263at 2411.541 kb on + strand, within Psest_2263at 2411.542 kb on - strand, within Psest_2263at 2411.542 kb on - strand, within Psest_2263at 2411.542 kb on - strand, within Psest_2263at 2411.542 kb on - strand, within Psest_2263at 2411.542 kb on - strand, within Psest_2263at 2411.542 kb on - strand, within Psest_2263at 2411.542 kb on - strand, within Psest_2263at 2411.542 kb on - strand, within Psest_2263at 2411.668 kb on - strand, within Psest_2263at 2411.730 kb on + strand, within Psest_2263at 2411.731 kb on - strand, within Psest_2263at 2411.731 kb on - strand, within Psest_2263at 2411.731 kb on - strand, within Psest_2263at 2411.890 kb on - strand, within Psest_2263at 2411.890 kb on - strand, within Psest_2263at 2411.917 kb on - strandat 2411.942 kb on + strandat 2411.943 kb on - strandat 2411.943 kb on - strandat 2411.946 kb on + strandat 2411.946 kb on + strandat 2411.946 kb on + strandat 2411.946 kb on + strandat 2411.946 kb on + strandat 2411.947 kb on - strandat 2411.947 kb on - strandat 2411.947 kb on - strandat 2411.947 kb on - strandat 2411.947 kb on - strandat 2412.378 kb on + strand, within Psest_2264at 2412.379 kb on - strand, within Psest_2264at 2412.379 kb on - strand, within Psest_2264at 2412.379 kb on - strand, within Psest_2264at 2412.460 kb on + strand, within Psest_2264at 2412.461 kb on - strand, within Psest_2264at 2412.566 kb on - strand, within Psest_2264at 2412.566 kb on - strand, within Psest_2264at 2412.823 kb on - strand, within Psest_2264at 2412.906 kb on + strand, within Psest_2264at 2412.906 kb on + strand, within Psest_2264at 2412.906 kb on + strand, within Psest_2264at 2413.202 kb on + strand, within Psest_2264at 2413.203 kb on - strand, within Psest_2264at 2413.289 kb on + strand, within Psest_2264at 2413.290 kb on - strand, within Psest_2264at 2413.290 kb on - strand, within Psest_2264at 2413.290 kb on - strand, within Psest_2264at 2413.350 kb on - strand, within Psest_2264at 2413.350 kb on - strand, within Psest_2264at 2413.350 kb on - strand, within Psest_2264at 2413.350 kb on - strand, within Psest_2264at 2413.357 kb on + strand, within Psest_2264at 2413.565 kb on + strandat 2413.566 kb on - strandat 2413.698 kb on + strandat 2413.698 kb on + strandat 2413.698 kb on + strandat 2413.698 kb on + strandat 2413.699 kb on - strandat 2414.105 kb on - strand, within Psest_2265at 2414.126 kb on - strand, within Psest_2265at 2414.209 kb on + strand, within Psest_2265at 2414.441 kb on + strand, within Psest_2265at 2414.614 kb on - strand, within Psest_2265at 2414.614 kb on - strand, within Psest_2265

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.12 mM
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2,411,254 - Psest_2263 0.69 +0.8
2,411,254 - Psest_2263 0.69 -0.0
2,411,541 + Psest_2263 0.78 -0.3
2,411,541 + Psest_2263 0.78 -0.3
2,411,541 + Psest_2263 0.78 -0.8
2,411,541 + Psest_2263 0.78 -0.4
2,411,541 + Psest_2263 0.78 +0.5
2,411,541 + Psest_2263 0.78 -1.3
2,411,541 + Psest_2263 0.78 +1.1
2,411,541 + Psest_2263 0.78 -1.4
2,411,541 + Psest_2263 0.78 -0.8
2,411,541 + Psest_2263 0.78 +1.0
2,411,542 - Psest_2263 0.78 -1.4
2,411,542 - Psest_2263 0.78 -0.6
2,411,542 - Psest_2263 0.78 -1.3
2,411,542 - Psest_2263 0.78 -2.2
2,411,542 - Psest_2263 0.78 -0.6
2,411,542 - Psest_2263 0.78 +1.0
2,411,542 - Psest_2263 0.78 +0.5
2,411,542 - Psest_2263 0.78 +0.6
2,411,668 - Psest_2263 0.82 -1.6
2,411,730 + Psest_2263 0.84 +1.2
2,411,731 - Psest_2263 0.84 -1.3
2,411,731 - Psest_2263 0.84 +2.6
2,411,731 - Psest_2263 0.84 -0.2
2,411,890 - Psest_2263 0.89 -0.2
2,411,890 - Psest_2263 0.89 +0.5
2,411,917 - +0.8
2,411,942 + +2.6
2,411,943 - +1.0
2,411,943 - +0.6
2,411,946 + -0.0
2,411,946 + -0.5
2,411,946 + -0.1
2,411,946 + -0.4
2,411,946 + -0.8
2,411,947 - +0.4
2,411,947 - -0.6
2,411,947 - -0.8
2,411,947 - -1.6
2,411,947 - +0.9
2,412,378 + Psest_2264 0.10 -0.3
2,412,379 - Psest_2264 0.10 -0.6
2,412,379 - Psest_2264 0.10 -1.3
2,412,379 - Psest_2264 0.10 -1.0
2,412,460 + Psest_2264 0.16 -0.0
2,412,461 - Psest_2264 0.16 -1.0
2,412,566 - Psest_2264 0.23 -0.1
2,412,566 - Psest_2264 0.23 -0.6
2,412,823 - Psest_2264 0.40 -0.5
2,412,906 + Psest_2264 0.46 +1.7
2,412,906 + Psest_2264 0.46 -0.6
2,412,906 + Psest_2264 0.46 -2.0
2,413,202 + Psest_2264 0.66 -0.9
2,413,203 - Psest_2264 0.66 -0.4
2,413,289 + Psest_2264 0.72 +0.5
2,413,290 - Psest_2264 0.72 -0.3
2,413,290 - Psest_2264 0.72 -1.2
2,413,290 - Psest_2264 0.72 +0.2
2,413,350 - Psest_2264 0.76 -1.3
2,413,350 - Psest_2264 0.76 -1.3
2,413,350 - Psest_2264 0.76 -1.0
2,413,350 - Psest_2264 0.76 +0.3
2,413,357 + Psest_2264 0.76 -0.6
2,413,565 + +1.2
2,413,566 - -0.8
2,413,698 + -1.1
2,413,698 + -0.1
2,413,698 + -0.7
2,413,698 + -1.3
2,413,699 - -0.3
2,414,105 - Psest_2265 0.32 -0.5
2,414,126 - Psest_2265 0.33 -0.7
2,414,209 + Psest_2265 0.40 +0.2
2,414,441 + Psest_2265 0.59 -0.0
2,414,614 - Psest_2265 0.72 -0.6
2,414,614 - Psest_2265 0.72 +1.6

Or see this region's nucleotide sequence