Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1876

Experiment: Zinc 0.12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1875 and Psest_1876 are separated by 135 nucleotidesPsest_1876 and Psest_1877 are separated by 87 nucleotides Psest_1875: Psest_1875 - Adenylate cyclase, family 3 (some proteins contain HAMP domain), at 1,985,565 to 1,987,067 _1875 Psest_1876: Psest_1876 - Predicted membrane protein, at 1,987,203 to 1,987,520 _1876 Psest_1877: Psest_1877 - AraC-type DNA-binding domain-containing proteins, at 1,987,608 to 1,988,657 _1877 Position (kb) 1987 1988Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1986.349 kb on + strand, within Psest_1875at 1986.349 kb on + strand, within Psest_1875at 1986.349 kb on + strand, within Psest_1875at 1986.350 kb on - strand, within Psest_1875at 1986.350 kb on - strand, within Psest_1875at 1986.350 kb on - strand, within Psest_1875at 1986.466 kb on + strand, within Psest_1875at 1986.466 kb on + strand, within Psest_1875at 1986.466 kb on + strand, within Psest_1875at 1986.467 kb on - strand, within Psest_1875at 1986.467 kb on - strand, within Psest_1875at 1986.467 kb on - strand, within Psest_1875at 1986.546 kb on + strand, within Psest_1875at 1986.637 kb on - strand, within Psest_1875at 1986.728 kb on + strand, within Psest_1875at 1986.728 kb on + strand, within Psest_1875at 1986.796 kb on + strand, within Psest_1875at 1986.829 kb on + strand, within Psest_1875at 1986.829 kb on + strand, within Psest_1875at 1986.830 kb on - strand, within Psest_1875at 1986.838 kb on + strand, within Psest_1875at 1986.838 kb on + strand, within Psest_1875at 1986.838 kb on + strand, within Psest_1875at 1986.838 kb on + strand, within Psest_1875at 1986.838 kb on + strand, within Psest_1875at 1986.838 kb on + strand, within Psest_1875at 1986.838 kb on + strand, within Psest_1875at 1986.838 kb on + strand, within Psest_1875at 1986.838 kb on + strand, within Psest_1875at 1986.839 kb on - strand, within Psest_1875at 1986.892 kb on + strand, within Psest_1875at 1986.892 kb on + strand, within Psest_1875at 1986.892 kb on + strand, within Psest_1875at 1986.893 kb on - strand, within Psest_1875at 1986.893 kb on - strand, within Psest_1875at 1986.893 kb on - strand, within Psest_1875at 1986.893 kb on - strand, within Psest_1875at 1986.893 kb on - strand, within Psest_1875at 1986.895 kb on + strand, within Psest_1875at 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.955 kb on + strandat 1986.956 kb on - strandat 1986.956 kb on - strandat 1986.956 kb on - strandat 1986.956 kb on - strandat 1986.956 kb on - strandat 1986.956 kb on - strandat 1986.956 kb on - strandat 1986.956 kb on - strandat 1986.956 kb on - strandat 1986.961 kb on + strandat 1987.128 kb on + strandat 1987.128 kb on + strandat 1987.174 kb on + strandat 1987.188 kb on + strandat 1987.264 kb on + strand, within Psest_1876at 1987.264 kb on + strand, within Psest_1876at 1987.387 kb on + strand, within Psest_1876at 1987.442 kb on + strand, within Psest_1876at 1987.442 kb on + strand, within Psest_1876at 1987.443 kb on - strand, within Psest_1876at 1987.465 kb on + strand, within Psest_1876at 1987.466 kb on - strand, within Psest_1876at 1987.474 kb on + strand, within Psest_1876at 1987.475 kb on - strand, within Psest_1876at 1987.525 kb on + strandat 1987.526 kb on - strandat 1987.553 kb on - strandat 1987.600 kb on - strandat 1987.600 kb on - strandat 1987.651 kb on + strandat 1988.217 kb on + strand, within Psest_1877at 1988.310 kb on + strand, within Psest_1877at 1988.310 kb on + strand, within Psest_1877at 1988.311 kb on - strand, within Psest_1877

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.12 mM
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1,986,349 + Psest_1875 0.52 +0.8
1,986,349 + Psest_1875 0.52 -1.5
1,986,349 + Psest_1875 0.52 +1.0
1,986,350 - Psest_1875 0.52 -0.3
1,986,350 - Psest_1875 0.52 +1.5
1,986,350 - Psest_1875 0.52 -1.9
1,986,466 + Psest_1875 0.60 -0.1
1,986,466 + Psest_1875 0.60 +0.6
1,986,466 + Psest_1875 0.60 -0.0
1,986,467 - Psest_1875 0.60 -0.4
1,986,467 - Psest_1875 0.60 +0.6
1,986,467 - Psest_1875 0.60 -1.0
1,986,546 + Psest_1875 0.65 -0.0
1,986,637 - Psest_1875 0.71 +0.2
1,986,728 + Psest_1875 0.77 -0.4
1,986,728 + Psest_1875 0.77 +0.1
1,986,796 + Psest_1875 0.82 -0.1
1,986,829 + Psest_1875 0.84 -0.1
1,986,829 + Psest_1875 0.84 +0.7
1,986,830 - Psest_1875 0.84 -1.0
1,986,838 + Psest_1875 0.85 -0.1
1,986,838 + Psest_1875 0.85 +0.5
1,986,838 + Psest_1875 0.85 +1.0
1,986,838 + Psest_1875 0.85 +2.6
1,986,838 + Psest_1875 0.85 -1.0
1,986,838 + Psest_1875 0.85 -0.1
1,986,838 + Psest_1875 0.85 +0.5
1,986,838 + Psest_1875 0.85 -0.4
1,986,838 + Psest_1875 0.85 -1.7
1,986,839 - Psest_1875 0.85 +1.0
1,986,892 + Psest_1875 0.88 -1.2
1,986,892 + Psest_1875 0.88 -0.5
1,986,892 + Psest_1875 0.88 -2.6
1,986,893 - Psest_1875 0.88 -0.2
1,986,893 - Psest_1875 0.88 -0.7
1,986,893 - Psest_1875 0.88 -0.0
1,986,893 - Psest_1875 0.88 +0.1
1,986,893 - Psest_1875 0.88 -0.3
1,986,895 + Psest_1875 0.88 -0.3
1,986,955 + -0.6
1,986,955 + +0.0
1,986,955 + +0.8
1,986,955 + +0.1
1,986,955 + +1.2
1,986,955 + -2.6
1,986,955 + -0.4
1,986,955 + -0.5
1,986,955 + -0.5
1,986,955 + +0.7
1,986,955 + +0.5
1,986,955 + -1.6
1,986,956 - +1.5
1,986,956 - +0.6
1,986,956 - +0.2
1,986,956 - +0.8
1,986,956 - +2.2
1,986,956 - -0.1
1,986,956 - -0.1
1,986,956 - +0.2
1,986,956 - +1.6
1,986,961 + +1.0
1,987,128 + +0.6
1,987,128 + +0.3
1,987,174 + -0.4
1,987,188 + -0.6
1,987,264 + Psest_1876 0.19 -1.6
1,987,264 + Psest_1876 0.19 +3.3
1,987,387 + Psest_1876 0.58 +3.4
1,987,442 + Psest_1876 0.75 +1.3
1,987,442 + Psest_1876 0.75 +0.2
1,987,443 - Psest_1876 0.75 +1.3
1,987,465 + Psest_1876 0.82 +2.8
1,987,466 - Psest_1876 0.83 -2.1
1,987,474 + Psest_1876 0.85 -1.2
1,987,475 - Psest_1876 0.86 +1.3
1,987,525 + +0.2
1,987,526 - -1.4
1,987,553 - +2.6
1,987,600 - +0.1
1,987,600 - +0.2
1,987,651 + +0.1
1,988,217 + Psest_1877 0.58 -0.6
1,988,310 + Psest_1877 0.67 +1.8
1,988,310 + Psest_1877 0.67 +0.2
1,988,311 - Psest_1877 0.67 +1.0

Or see this region's nucleotide sequence