Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1373

Experiment: Zinc 0.12 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1372 and Psest_1373 are separated by 109 nucleotidesPsest_1373 and Psest_1374 are separated by 130 nucleotides Psest_1372: Psest_1372 - Methyl-accepting chemotaxis protein, at 1,480,199 to 1,481,818 _1372 Psest_1373: Psest_1373 - Serine hydrolase (FSH1)., at 1,481,928 to 1,482,875 _1373 Psest_1374: Psest_1374 - Arabinose efflux permease, at 1,483,006 to 1,484,232 _1374 Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -2 -1 0 1 2at 1481.099 kb on - strand, within Psest_1372at 1481.549 kb on - strand, within Psest_1372at 1481.816 kb on + strandat 1482.075 kb on + strand, within Psest_1373at 1482.075 kb on + strand, within Psest_1373at 1482.076 kb on - strand, within Psest_1373at 1482.103 kb on + strand, within Psest_1373at 1482.103 kb on + strand, within Psest_1373at 1482.104 kb on - strand, within Psest_1373at 1482.104 kb on - strand, within Psest_1373at 1482.133 kb on + strand, within Psest_1373at 1482.133 kb on + strand, within Psest_1373at 1482.134 kb on - strand, within Psest_1373at 1482.159 kb on + strand, within Psest_1373at 1482.259 kb on - strand, within Psest_1373at 1482.259 kb on - strand, within Psest_1373at 1482.259 kb on - strand, within Psest_1373at 1482.391 kb on + strand, within Psest_1373at 1482.391 kb on + strand, within Psest_1373at 1482.460 kb on + strand, within Psest_1373at 1482.461 kb on - strand, within Psest_1373at 1482.461 kb on - strand, within Psest_1373at 1482.601 kb on + strand, within Psest_1373at 1482.601 kb on + strand, within Psest_1373at 1482.602 kb on - strand, within Psest_1373at 1482.899 kb on + strandat 1482.899 kb on + strandat 1482.906 kb on - strandat 1482.906 kb on - strandat 1482.960 kb on + strandat 1482.960 kb on + strandat 1482.960 kb on + strandat 1482.960 kb on + strandat 1482.960 kb on + strandat 1482.961 kb on - strandat 1482.961 kb on - strandat 1482.961 kb on - strandat 1482.961 kb on - strandat 1482.961 kb on - strandat 1482.961 kb on - strandat 1482.961 kb on - strandat 1482.961 kb on - strandat 1483.045 kb on + strandat 1483.115 kb on + strandat 1483.115 kb on + strandat 1483.345 kb on + strand, within Psest_1374at 1483.346 kb on - strand, within Psest_1374at 1483.346 kb on - strand, within Psest_1374at 1483.351 kb on + strand, within Psest_1374at 1483.352 kb on - strand, within Psest_1374at 1483.523 kb on + strand, within Psest_1374at 1483.524 kb on - strand, within Psest_1374at 1483.524 kb on - strand, within Psest_1374at 1483.524 kb on - strand, within Psest_1374at 1483.524 kb on - strand, within Psest_1374at 1483.677 kb on + strand, within Psest_1374at 1483.862 kb on + strand, within Psest_1374at 1483.862 kb on + strand, within Psest_1374at 1483.862 kb on + strand, within Psest_1374at 1483.863 kb on - strand, within Psest_1374at 1483.863 kb on - strand, within Psest_1374at 1483.863 kb on - strand, within Psest_1374

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 0.12 mM
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1,481,099 - Psest_1372 0.56 -0.0
1,481,549 - Psest_1372 0.83 +1.1
1,481,816 + +0.8
1,482,075 + Psest_1373 0.16 +0.2
1,482,075 + Psest_1373 0.16 -0.7
1,482,076 - Psest_1373 0.16 -1.5
1,482,103 + Psest_1373 0.18 -0.7
1,482,103 + Psest_1373 0.18 -0.1
1,482,104 - Psest_1373 0.19 -1.4
1,482,104 - Psest_1373 0.19 -0.5
1,482,133 + Psest_1373 0.22 -0.8
1,482,133 + Psest_1373 0.22 +0.1
1,482,134 - Psest_1373 0.22 -1.1
1,482,159 + Psest_1373 0.24 +0.2
1,482,259 - Psest_1373 0.35 +0.0
1,482,259 - Psest_1373 0.35 -0.2
1,482,259 - Psest_1373 0.35 -0.7
1,482,391 + Psest_1373 0.49 +0.1
1,482,391 + Psest_1373 0.49 -0.2
1,482,460 + Psest_1373 0.56 -2.0
1,482,461 - Psest_1373 0.56 +1.8
1,482,461 - Psest_1373 0.56 +0.5
1,482,601 + Psest_1373 0.71 +0.9
1,482,601 + Psest_1373 0.71 -0.4
1,482,602 - Psest_1373 0.71 -0.7
1,482,899 + +0.2
1,482,899 + -1.4
1,482,906 - +0.0
1,482,906 - +0.5
1,482,960 + +0.3
1,482,960 + -1.8
1,482,960 + +0.3
1,482,960 + -0.1
1,482,960 + +0.1
1,482,961 - -0.3
1,482,961 - +0.1
1,482,961 - +0.1
1,482,961 - +1.2
1,482,961 - +0.3
1,482,961 - +1.5
1,482,961 - +1.0
1,482,961 - -0.1
1,483,045 + +0.6
1,483,115 + -0.2
1,483,115 + -0.7
1,483,345 + Psest_1374 0.28 +1.6
1,483,346 - Psest_1374 0.28 +0.6
1,483,346 - Psest_1374 0.28 -0.2
1,483,351 + Psest_1374 0.28 +0.5
1,483,352 - Psest_1374 0.28 -1.0
1,483,523 + Psest_1374 0.42 +0.2
1,483,524 - Psest_1374 0.42 -0.6
1,483,524 - Psest_1374 0.42 -0.2
1,483,524 - Psest_1374 0.42 +0.2
1,483,524 - Psest_1374 0.42 -0.5
1,483,677 + Psest_1374 0.55 +1.0
1,483,862 + Psest_1374 0.70 +0.4
1,483,862 + Psest_1374 0.70 -0.4
1,483,862 + Psest_1374 0.70 +1.8
1,483,863 - Psest_1374 0.70 -0.1
1,483,863 - Psest_1374 0.70 +0.4
1,483,863 - Psest_1374 0.70 +0.1

Or see this region's nucleotide sequence