Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10795

Experiment: RCH2_defined_1percent_glucose with Chloride 600 mM and Betaine 100 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10785 and BWI76_RS10790 overlap by 4 nucleotidesBWI76_RS10790 and BWI76_RS10795 are separated by 193 nucleotidesBWI76_RS10795 and BWI76_RS10800 are separated by 427 nucleotides BWI76_RS10785: BWI76_RS10785 - transcriptional regulator, at 2,276,216 to 2,276,854 _RS10785 BWI76_RS10790: BWI76_RS10790 - hypothetical protein, at 2,276,851 to 2,277,246 _RS10790 BWI76_RS10795: BWI76_RS10795 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 2,277,440 to 2,281,402 _RS10795 BWI76_RS10800: BWI76_RS10800 - sodium:proline symporter, at 2,281,830 to 2,283,338 _RS10800 Position (kb) 2277 2278 2279 2280 2281 2282Strain fitness (log2 ratio) -1 0 1 2at 2276.482 kb on - strand, within BWI76_RS10785at 2276.525 kb on - strand, within BWI76_RS10785at 2276.525 kb on - strand, within BWI76_RS10785at 2276.728 kb on + strand, within BWI76_RS10785at 2276.728 kb on + strand, within BWI76_RS10785at 2276.942 kb on + strand, within BWI76_RS10790at 2277.019 kb on + strand, within BWI76_RS10790at 2277.082 kb on + strand, within BWI76_RS10790at 2277.125 kb on + strand, within BWI76_RS10790at 2277.133 kb on - strand, within BWI76_RS10790at 2277.303 kb on + strandat 2277.330 kb on - strandat 2277.515 kb on - strandat 2277.846 kb on - strand, within BWI76_RS10795at 2277.961 kb on + strand, within BWI76_RS10795at 2278.182 kb on + strand, within BWI76_RS10795at 2278.635 kb on + strand, within BWI76_RS10795at 2278.709 kb on + strand, within BWI76_RS10795at 2279.086 kb on + strand, within BWI76_RS10795at 2279.486 kb on + strand, within BWI76_RS10795at 2279.608 kb on - strand, within BWI76_RS10795at 2280.414 kb on - strand, within BWI76_RS10795at 2280.519 kb on + strand, within BWI76_RS10795at 2280.737 kb on + strand, within BWI76_RS10795at 2280.848 kb on + strand, within BWI76_RS10795at 2280.922 kb on + strand, within BWI76_RS10795at 2280.930 kb on - strand, within BWI76_RS10795at 2281.167 kb on + strandat 2281.183 kb on - strandat 2281.375 kb on + strandat 2281.383 kb on - strandat 2281.383 kb on - strandat 2281.456 kb on - strandat 2281.693 kb on + strandat 2281.736 kb on - strandat 2281.736 kb on - strandat 2281.765 kb on - strandat 2281.833 kb on + strandat 2281.915 kb on - strandat 2281.951 kb on + strandat 2281.951 kb on + strandat 2281.951 kb on + strandat 2281.951 kb on + strandat 2281.951 kb on + strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2281.959 kb on - strandat 2282.067 kb on - strand, within BWI76_RS10800at 2282.070 kb on + strand, within BWI76_RS10800at 2282.072 kb on - strand, within BWI76_RS10800at 2282.073 kb on - strand, within BWI76_RS10800at 2282.073 kb on - strand, within BWI76_RS10800at 2282.085 kb on - strand, within BWI76_RS10800at 2282.102 kb on + strand, within BWI76_RS10800at 2282.102 kb on + strand, within BWI76_RS10800at 2282.108 kb on + strand, within BWI76_RS10800at 2282.195 kb on - strand, within BWI76_RS10800at 2282.195 kb on - strand, within BWI76_RS10800at 2282.270 kb on - strand, within BWI76_RS10800at 2282.272 kb on + strand, within BWI76_RS10800at 2282.280 kb on - strand, within BWI76_RS10800at 2282.280 kb on - strand, within BWI76_RS10800at 2282.282 kb on + strand, within BWI76_RS10800at 2282.282 kb on + strand, within BWI76_RS10800at 2282.285 kb on - strand, within BWI76_RS10800at 2282.301 kb on - strand, within BWI76_RS10800at 2282.349 kb on - strand, within BWI76_RS10800at 2282.386 kb on - strand, within BWI76_RS10800at 2282.394 kb on + strand, within BWI76_RS10800at 2282.402 kb on - strand, within BWI76_RS10800

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 600 mM and Betaine 100 uM
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2,276,482 - BWI76_RS10785 0.42 -0.4
2,276,525 - BWI76_RS10785 0.48 -0.7
2,276,525 - BWI76_RS10785 0.48 -0.6
2,276,728 + BWI76_RS10785 0.80 +0.2
2,276,728 + BWI76_RS10785 0.80 +0.0
2,276,942 + BWI76_RS10790 0.23 +0.4
2,277,019 + BWI76_RS10790 0.42 +1.0
2,277,082 + BWI76_RS10790 0.58 +0.6
2,277,125 + BWI76_RS10790 0.69 -0.3
2,277,133 - BWI76_RS10790 0.71 -0.2
2,277,303 + +0.3
2,277,330 - -0.4
2,277,515 - -1.4
2,277,846 - BWI76_RS10795 0.10 +0.5
2,277,961 + BWI76_RS10795 0.13 +0.1
2,278,182 + BWI76_RS10795 0.19 +0.1
2,278,635 + BWI76_RS10795 0.30 +0.4
2,278,709 + BWI76_RS10795 0.32 -1.2
2,279,086 + BWI76_RS10795 0.42 +0.7
2,279,486 + BWI76_RS10795 0.52 -0.0
2,279,608 - BWI76_RS10795 0.55 +0.2
2,280,414 - BWI76_RS10795 0.75 +0.1
2,280,519 + BWI76_RS10795 0.78 +0.2
2,280,737 + BWI76_RS10795 0.83 -0.5
2,280,848 + BWI76_RS10795 0.86 -0.6
2,280,922 + BWI76_RS10795 0.88 -0.2
2,280,930 - BWI76_RS10795 0.88 +0.9
2,281,167 + -0.4
2,281,183 - -0.7
2,281,375 + +1.8
2,281,383 - -0.7
2,281,383 - +0.1
2,281,456 - +0.3
2,281,693 + -0.8
2,281,736 - -0.3
2,281,736 - +0.4
2,281,765 - -0.2
2,281,833 + -0.1
2,281,915 - -0.5
2,281,951 + -0.0
2,281,951 + -0.2
2,281,951 + +0.3
2,281,951 + -0.4
2,281,951 + +1.3
2,281,959 - -0.4
2,281,959 - -0.3
2,281,959 - +0.7
2,281,959 - -1.3
2,281,959 - +0.7
2,281,959 - +0.6
2,281,959 - -0.0
2,281,959 - -1.0
2,281,959 - +0.3
2,282,067 - BWI76_RS10800 0.16 +0.7
2,282,070 + BWI76_RS10800 0.16 +0.4
2,282,072 - BWI76_RS10800 0.16 -0.9
2,282,073 - BWI76_RS10800 0.16 +0.0
2,282,073 - BWI76_RS10800 0.16 +0.3
2,282,085 - BWI76_RS10800 0.17 -0.5
2,282,102 + BWI76_RS10800 0.18 +0.2
2,282,102 + BWI76_RS10800 0.18 +0.9
2,282,108 + BWI76_RS10800 0.18 +0.1
2,282,195 - BWI76_RS10800 0.24 -0.9
2,282,195 - BWI76_RS10800 0.24 +0.2
2,282,270 - BWI76_RS10800 0.29 -1.6
2,282,272 + BWI76_RS10800 0.29 -0.1
2,282,280 - BWI76_RS10800 0.30 -0.6
2,282,280 - BWI76_RS10800 0.30 -0.5
2,282,282 + BWI76_RS10800 0.30 +1.8
2,282,282 + BWI76_RS10800 0.30 -0.0
2,282,285 - BWI76_RS10800 0.30 -0.8
2,282,301 - BWI76_RS10800 0.31 -0.4
2,282,349 - BWI76_RS10800 0.34 -0.4
2,282,386 - BWI76_RS10800 0.37 -0.2
2,282,394 + BWI76_RS10800 0.37 -0.6
2,282,402 - BWI76_RS10800 0.38 -0.6

Or see this region's nucleotide sequence