Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03540

Experiment: RCH2_defined_1percent_glucose with Chloride 600 mM and Betaine 100 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03535 and BWI76_RS03540 are separated by 123 nucleotidesBWI76_RS03540 and BWI76_RS03545 are separated by 241 nucleotidesBWI76_RS03545 and BWI76_RS03550 are separated by 17 nucleotides BWI76_RS03535: BWI76_RS03535 - Tryptophanase (EC 4.1.99.1) (from data), at 734,065 to 735,453 _RS03535 BWI76_RS03540: BWI76_RS03540 - tryptophanase leader peptide, at 735,577 to 735,672 _RS03540 BWI76_RS03545: BWI76_RS03545 - QacE family quaternary ammonium compound efflux SMR transporter, at 735,914 to 736,243 _RS03545 BWI76_RS03550: BWI76_RS03550 - QacE family quaternary ammonium compound efflux SMR transporter, at 736,261 to 736,680 _RS03550 Position (kb) 735 736Strain fitness (log2 ratio) -2 -1 0 1 2at 734.609 kb on + strand, within BWI76_RS03535at 734.639 kb on - strand, within BWI76_RS03535at 734.644 kb on - strand, within BWI76_RS03535at 734.686 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.691 kb on + strand, within BWI76_RS03535at 734.694 kb on - strand, within BWI76_RS03535at 734.694 kb on - strand, within BWI76_RS03535at 734.699 kb on - strand, within BWI76_RS03535at 734.699 kb on - strand, within BWI76_RS03535at 734.699 kb on - strand, within BWI76_RS03535at 734.706 kb on + strand, within BWI76_RS03535at 734.744 kb on + strand, within BWI76_RS03535at 734.752 kb on - strand, within BWI76_RS03535at 734.752 kb on - strand, within BWI76_RS03535at 734.763 kb on + strand, within BWI76_RS03535at 734.836 kb on + strand, within BWI76_RS03535at 734.842 kb on - strand, within BWI76_RS03535at 734.844 kb on - strand, within BWI76_RS03535at 734.885 kb on + strand, within BWI76_RS03535at 734.887 kb on + strand, within BWI76_RS03535at 734.893 kb on + strand, within BWI76_RS03535at 734.940 kb on - strand, within BWI76_RS03535at 734.942 kb on - strand, within BWI76_RS03535at 734.989 kb on + strand, within BWI76_RS03535at 734.989 kb on + strand, within BWI76_RS03535at 735.009 kb on - strand, within BWI76_RS03535at 735.047 kb on + strand, within BWI76_RS03535at 735.144 kb on + strand, within BWI76_RS03535at 735.157 kb on - strand, within BWI76_RS03535at 735.159 kb on + strand, within BWI76_RS03535at 735.174 kb on - strand, within BWI76_RS03535at 735.176 kb on + strand, within BWI76_RS03535at 735.176 kb on + strand, within BWI76_RS03535at 735.176 kb on + strand, within BWI76_RS03535at 735.183 kb on - strand, within BWI76_RS03535at 735.232 kb on - strand, within BWI76_RS03535at 735.238 kb on + strand, within BWI76_RS03535at 735.266 kb on - strand, within BWI76_RS03535at 735.284 kb on - strand, within BWI76_RS03535at 735.294 kb on - strand, within BWI76_RS03535at 735.299 kb on - strand, within BWI76_RS03535at 735.299 kb on - strand, within BWI76_RS03535at 735.315 kb on + strandat 735.320 kb on + strandat 735.320 kb on + strandat 735.327 kb on - strandat 735.362 kb on + strandat 735.362 kb on + strandat 735.366 kb on + strandat 735.374 kb on + strandat 735.375 kb on - strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.387 kb on + strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.395 kb on - strandat 735.409 kb on + strandat 735.433 kb on + strandat 735.435 kb on + strandat 735.435 kb on + strandat 735.435 kb on + strandat 735.435 kb on + strandat 735.435 kb on + strandat 735.435 kb on + strandat 735.443 kb on - strandat 735.443 kb on - strandat 735.443 kb on - strandat 735.443 kb on - strandat 735.443 kb on - strandat 735.443 kb on - strandat 735.468 kb on + strandat 735.481 kb on + strandat 735.596 kb on - strand, within BWI76_RS03540at 735.611 kb on + strand, within BWI76_RS03540at 735.612 kb on + strand, within BWI76_RS03540at 735.614 kb on - strand, within BWI76_RS03540at 735.634 kb on + strand, within BWI76_RS03540at 735.634 kb on + strand, within BWI76_RS03540at 735.634 kb on + strand, within BWI76_RS03540at 735.634 kb on + strand, within BWI76_RS03540at 735.639 kb on + strand, within BWI76_RS03540at 735.642 kb on - strand, within BWI76_RS03540at 735.674 kb on + strandat 735.682 kb on - strandat 735.688 kb on + strandat 735.697 kb on - strandat 735.770 kb on + strandat 735.803 kb on + strandat 735.806 kb on + strandat 735.827 kb on - strandat 735.880 kb on + strandat 735.912 kb on + strandat 735.912 kb on + strandat 735.913 kb on + strandat 735.914 kb on - strandat 735.920 kb on - strandat 735.964 kb on - strand, within BWI76_RS03545at 735.964 kb on - strand, within BWI76_RS03545at 735.974 kb on - strand, within BWI76_RS03545at 736.036 kb on + strand, within BWI76_RS03545at 736.038 kb on + strand, within BWI76_RS03545at 736.075 kb on + strand, within BWI76_RS03545at 736.075 kb on + strand, within BWI76_RS03545at 736.094 kb on + strand, within BWI76_RS03545at 736.102 kb on - strand, within BWI76_RS03545at 736.104 kb on + strand, within BWI76_RS03545at 736.112 kb on - strand, within BWI76_RS03545at 736.149 kb on + strand, within BWI76_RS03545at 736.457 kb on - strand, within BWI76_RS03550at 736.478 kb on + strand, within BWI76_RS03550at 736.478 kb on + strand, within BWI76_RS03550at 736.478 kb on + strand, within BWI76_RS03550at 736.491 kb on - strand, within BWI76_RS03550at 736.491 kb on - strand, within BWI76_RS03550at 736.509 kb on - strand, within BWI76_RS03550at 736.548 kb on - strand, within BWI76_RS03550at 736.608 kb on + strand, within BWI76_RS03550

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 600 mM and Betaine 100 uM
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734,609 + BWI76_RS03535 0.39 -0.4
734,639 - BWI76_RS03535 0.41 -0.4
734,644 - BWI76_RS03535 0.42 +1.7
734,686 + BWI76_RS03535 0.45 -0.1
734,691 + BWI76_RS03535 0.45 -1.2
734,691 + BWI76_RS03535 0.45 +0.1
734,691 + BWI76_RS03535 0.45 -0.9
734,691 + BWI76_RS03535 0.45 +0.3
734,691 + BWI76_RS03535 0.45 +0.1
734,691 + BWI76_RS03535 0.45 -0.0
734,694 - BWI76_RS03535 0.45 +0.0
734,694 - BWI76_RS03535 0.45 +0.6
734,699 - BWI76_RS03535 0.46 +0.0
734,699 - BWI76_RS03535 0.46 -0.9
734,699 - BWI76_RS03535 0.46 -0.2
734,706 + BWI76_RS03535 0.46 +0.3
734,744 + BWI76_RS03535 0.49 -0.5
734,752 - BWI76_RS03535 0.49 +0.5
734,752 - BWI76_RS03535 0.49 -0.2
734,763 + BWI76_RS03535 0.50 +0.2
734,836 + BWI76_RS03535 0.56 -0.6
734,842 - BWI76_RS03535 0.56 +0.6
734,844 - BWI76_RS03535 0.56 -0.3
734,885 + BWI76_RS03535 0.59 +0.3
734,887 + BWI76_RS03535 0.59 -2.2
734,893 + BWI76_RS03535 0.60 -1.0
734,940 - BWI76_RS03535 0.63 -0.5
734,942 - BWI76_RS03535 0.63 +0.3
734,989 + BWI76_RS03535 0.67 -0.1
734,989 + BWI76_RS03535 0.67 -0.4
735,009 - BWI76_RS03535 0.68 +0.9
735,047 + BWI76_RS03535 0.71 -0.3
735,144 + BWI76_RS03535 0.78 +0.9
735,157 - BWI76_RS03535 0.79 -0.1
735,159 + BWI76_RS03535 0.79 -0.4
735,174 - BWI76_RS03535 0.80 -0.1
735,176 + BWI76_RS03535 0.80 -0.1
735,176 + BWI76_RS03535 0.80 -0.1
735,176 + BWI76_RS03535 0.80 -0.1
735,183 - BWI76_RS03535 0.80 +0.1
735,232 - BWI76_RS03535 0.84 +0.5
735,238 + BWI76_RS03535 0.84 -0.3
735,266 - BWI76_RS03535 0.86 +0.2
735,284 - BWI76_RS03535 0.88 -2.5
735,294 - BWI76_RS03535 0.88 +0.6
735,299 - BWI76_RS03535 0.89 +0.1
735,299 - BWI76_RS03535 0.89 +0.0
735,315 + +1.2
735,320 + +0.4
735,320 + -0.6
735,327 - -0.3
735,362 + -0.2
735,362 + -0.2
735,366 + -1.8
735,374 + +0.3
735,375 - +0.2
735,387 + -0.4
735,387 + +0.9
735,387 + -1.8
735,387 + +0.1
735,387 + -1.3
735,387 + -0.2
735,387 + +1.1
735,387 + +0.4
735,387 + -1.1
735,387 + -1.8
735,387 + +0.1
735,387 + +0.9
735,387 + -0.6
735,387 + +2.1
735,387 + +0.6
735,387 + -2.6
735,387 + +0.5
735,387 + +0.3
735,387 + +0.6
735,395 - -0.4
735,395 - +0.2
735,395 - -1.4
735,395 - +1.4
735,395 - -0.1
735,395 - +0.0
735,395 - +1.4
735,395 - -1.4
735,395 - -0.2
735,409 + +0.8
735,433 + -0.4
735,435 + -0.2
735,435 + -0.4
735,435 + -0.1
735,435 + +1.6
735,435 + -0.4
735,435 + -1.2
735,443 - +1.7
735,443 - -2.1
735,443 - +1.4
735,443 - +0.7
735,443 - -1.4
735,443 - -0.7
735,468 + -0.2
735,481 + -0.9
735,596 - BWI76_RS03540 0.20 +0.4
735,611 + BWI76_RS03540 0.35 -0.9
735,612 + BWI76_RS03540 0.36 -1.5
735,614 - BWI76_RS03540 0.39 -2.2
735,634 + BWI76_RS03540 0.59 -0.4
735,634 + BWI76_RS03540 0.59 +2.0
735,634 + BWI76_RS03540 0.59 -1.6
735,634 + BWI76_RS03540 0.59 -0.7
735,639 + BWI76_RS03540 0.65 -0.7
735,642 - BWI76_RS03540 0.68 -1.2
735,674 + +1.3
735,682 - -0.6
735,688 + -0.4
735,697 - +0.2
735,770 + +0.0
735,803 + -0.5
735,806 + +0.4
735,827 - +0.5
735,880 + +0.6
735,912 + +0.3
735,912 + -0.1
735,913 + +0.5
735,914 - -0.9
735,920 - -0.6
735,964 - BWI76_RS03545 0.15 -0.5
735,964 - BWI76_RS03545 0.15 +0.2
735,974 - BWI76_RS03545 0.18 +1.8
736,036 + BWI76_RS03545 0.37 -0.6
736,038 + BWI76_RS03545 0.38 +0.5
736,075 + BWI76_RS03545 0.49 +0.1
736,075 + BWI76_RS03545 0.49 +1.1
736,094 + BWI76_RS03545 0.55 -1.1
736,102 - BWI76_RS03545 0.57 -1.4
736,104 + BWI76_RS03545 0.58 -0.1
736,112 - BWI76_RS03545 0.60 -1.2
736,149 + BWI76_RS03545 0.71 +0.1
736,457 - BWI76_RS03550 0.47 -0.1
736,478 + BWI76_RS03550 0.52 +0.1
736,478 + BWI76_RS03550 0.52 +0.4
736,478 + BWI76_RS03550 0.52 +0.1
736,491 - BWI76_RS03550 0.55 +0.4
736,491 - BWI76_RS03550 0.55 -0.2
736,509 - BWI76_RS03550 0.59 +1.2
736,548 - BWI76_RS03550 0.68 -0.1
736,608 + BWI76_RS03550 0.83 +0.1

Or see this region's nucleotide sequence