Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2236

Experiment: Thallium(I) acetate 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2235 and Psest_2236 overlap by 4 nucleotidesPsest_2236 and Psest_2237 are separated by 89 nucleotidesPsest_2237 and Psest_2238 are separated by 260 nucleotidesPsest_2238 and Psest_2239 overlap by 1 nucleotides Psest_2235: Psest_2235 - DNA damage response nuclease (from data), at 2,386,609 to 2,388,246 _2235 Psest_2236: Psest_2236 - Rad3-related DNA helicases, at 2,388,243 to 2,390,522 _2236 Psest_2237: Psest_2237 - tRNA_Leu_TAA, at 2,390,612 to 2,390,698 _2237 Psest_2238: Psest_2238 - hypothetical protein, at 2,390,959 to 2,391,366 _2238 Psest_2239: Psest_2239 - RES domain., at 2,391,366 to 2,392,052 _2239 Position (kb) 2388 2389 2390 2391Strain fitness (log2 ratio) -2 -1 0 1 2at 2387.710 kb on + strand, within Psest_2235at 2387.710 kb on + strand, within Psest_2235at 2387.710 kb on + strand, within Psest_2235at 2387.710 kb on + strand, within Psest_2235at 2387.711 kb on - strand, within Psest_2235at 2387.711 kb on - strand, within Psest_2235at 2387.711 kb on - strand, within Psest_2235at 2387.711 kb on - strand, within Psest_2235at 2387.713 kb on + strand, within Psest_2235at 2387.713 kb on + strand, within Psest_2235at 2387.713 kb on + strand, within Psest_2235at 2387.713 kb on + strand, within Psest_2235at 2387.713 kb on + strand, within Psest_2235at 2387.714 kb on - strand, within Psest_2235at 2387.714 kb on - strand, within Psest_2235at 2387.714 kb on - strand, within Psest_2235at 2388.182 kb on - strandat 2388.612 kb on + strand, within Psest_2236at 2389.119 kb on + strand, within Psest_2236at 2389.119 kb on + strand, within Psest_2236at 2389.119 kb on + strand, within Psest_2236at 2389.119 kb on + strand, within Psest_2236at 2389.119 kb on + strand, within Psest_2236at 2389.119 kb on + strand, within Psest_2236at 2389.119 kb on + strand, within Psest_2236at 2389.119 kb on + strand, within Psest_2236at 2389.120 kb on - strand, within Psest_2236at 2389.120 kb on - strand, within Psest_2236at 2389.120 kb on - strand, within Psest_2236at 2389.120 kb on - strand, within Psest_2236at 2389.120 kb on - strand, within Psest_2236at 2389.120 kb on - strand, within Psest_2236at 2389.219 kb on - strand, within Psest_2236at 2389.222 kb on - strand, within Psest_2236at 2389.222 kb on - strand, within Psest_2236at 2389.269 kb on + strand, within Psest_2236at 2389.269 kb on + strand, within Psest_2236at 2389.270 kb on - strand, within Psest_2236at 2389.270 kb on - strand, within Psest_2236at 2389.270 kb on - strand, within Psest_2236at 2389.270 kb on - strand, within Psest_2236at 2389.275 kb on + strand, within Psest_2236at 2389.275 kb on + strand, within Psest_2236at 2389.275 kb on + strand, within Psest_2236at 2389.275 kb on + strand, within Psest_2236at 2389.275 kb on + strand, within Psest_2236at 2389.275 kb on + strand, within Psest_2236at 2389.276 kb on - strand, within Psest_2236at 2389.276 kb on - strand, within Psest_2236at 2389.276 kb on - strand, within Psest_2236at 2389.276 kb on - strand, within Psest_2236at 2389.278 kb on + strand, within Psest_2236at 2389.279 kb on - strand, within Psest_2236at 2389.279 kb on - strand, within Psest_2236at 2389.279 kb on - strand, within Psest_2236at 2389.279 kb on - strand, within Psest_2236at 2389.386 kb on + strand, within Psest_2236at 2389.386 kb on + strand, within Psest_2236at 2389.386 kb on + strand, within Psest_2236at 2389.386 kb on + strand, within Psest_2236at 2389.386 kb on + strand, within Psest_2236at 2389.387 kb on - strand, within Psest_2236at 2389.387 kb on - strand, within Psest_2236at 2389.387 kb on - strand, within Psest_2236at 2389.512 kb on + strand, within Psest_2236at 2389.513 kb on - strand, within Psest_2236at 2389.513 kb on - strand, within Psest_2236at 2389.513 kb on - strand, within Psest_2236at 2389.513 kb on - strand, within Psest_2236at 2389.584 kb on + strand, within Psest_2236at 2389.585 kb on - strand, within Psest_2236at 2390.028 kb on + strand, within Psest_2236at 2390.028 kb on + strand, within Psest_2236at 2390.028 kb on + strand, within Psest_2236at 2390.028 kb on + strand, within Psest_2236at 2390.028 kb on + strand, within Psest_2236at 2390.029 kb on - strand, within Psest_2236at 2390.029 kb on - strand, within Psest_2236at 2390.029 kb on - strand, within Psest_2236at 2390.029 kb on - strand, within Psest_2236at 2390.029 kb on - strand, within Psest_2236at 2390.029 kb on - strand, within Psest_2236at 2390.055 kb on + strand, within Psest_2236at 2390.198 kb on - strand, within Psest_2236at 2390.326 kb on + strandat 2390.326 kb on + strandat 2390.352 kb on + strandat 2390.352 kb on + strandat 2390.353 kb on - strandat 2390.353 kb on - strandat 2390.353 kb on - strandat 2390.358 kb on + strandat 2390.358 kb on + strandat 2390.358 kb on + strandat 2390.358 kb on + strandat 2390.358 kb on + strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.359 kb on - strandat 2390.741 kb on + strandat 2390.762 kb on + strandat 2390.762 kb on + strandat 2390.763 kb on - strandat 2390.763 kb on - strandat 2390.844 kb on + strandat 2390.845 kb on - strandat 2390.888 kb on + strandat 2390.889 kb on - strandat 2390.889 kb on - strandat 2390.958 kb on + strandat 2391.042 kb on + strand, within Psest_2238at 2391.042 kb on + strand, within Psest_2238at 2391.042 kb on + strand, within Psest_2238at 2391.043 kb on - strand, within Psest_2238at 2391.058 kb on - strand, within Psest_2238at 2391.184 kb on - strand, within Psest_2238at 2391.225 kb on + strand, within Psest_2238at 2391.226 kb on - strand, within Psest_2238

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.1 mg/ml
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2,387,710 + Psest_2235 0.67 +0.9
2,387,710 + Psest_2235 0.67 -0.5
2,387,710 + Psest_2235 0.67 +0.3
2,387,710 + Psest_2235 0.67 -0.4
2,387,711 - Psest_2235 0.67 +0.5
2,387,711 - Psest_2235 0.67 +0.1
2,387,711 - Psest_2235 0.67 +0.2
2,387,711 - Psest_2235 0.67 -2.0
2,387,713 + Psest_2235 0.67 +1.3
2,387,713 + Psest_2235 0.67 -0.4
2,387,713 + Psest_2235 0.67 -1.4
2,387,713 + Psest_2235 0.67 +1.0
2,387,713 + Psest_2235 0.67 +1.0
2,387,714 - Psest_2235 0.67 -0.6
2,387,714 - Psest_2235 0.67 -2.4
2,387,714 - Psest_2235 0.67 +1.2
2,388,182 - +0.7
2,388,612 + Psest_2236 0.16 +0.9
2,389,119 + Psest_2236 0.38 +0.7
2,389,119 + Psest_2236 0.38 -0.3
2,389,119 + Psest_2236 0.38 -0.1
2,389,119 + Psest_2236 0.38 +0.1
2,389,119 + Psest_2236 0.38 -0.6
2,389,119 + Psest_2236 0.38 -1.2
2,389,119 + Psest_2236 0.38 -0.1
2,389,119 + Psest_2236 0.38 -0.1
2,389,120 - Psest_2236 0.38 -0.5
2,389,120 - Psest_2236 0.38 +0.2
2,389,120 - Psest_2236 0.38 -0.6
2,389,120 - Psest_2236 0.38 -0.4
2,389,120 - Psest_2236 0.38 -0.3
2,389,120 - Psest_2236 0.38 -2.1
2,389,219 - Psest_2236 0.43 -0.2
2,389,222 - Psest_2236 0.43 -1.8
2,389,222 - Psest_2236 0.43 +0.2
2,389,269 + Psest_2236 0.45 -2.3
2,389,269 + Psest_2236 0.45 -1.2
2,389,270 - Psest_2236 0.45 -1.3
2,389,270 - Psest_2236 0.45 +0.6
2,389,270 - Psest_2236 0.45 -0.5
2,389,270 - Psest_2236 0.45 +0.6
2,389,275 + Psest_2236 0.45 +0.6
2,389,275 + Psest_2236 0.45 -0.7
2,389,275 + Psest_2236 0.45 +0.2
2,389,275 + Psest_2236 0.45 -0.8
2,389,275 + Psest_2236 0.45 -1.2
2,389,275 + Psest_2236 0.45 +0.9
2,389,276 - Psest_2236 0.45 +1.1
2,389,276 - Psest_2236 0.45 -0.0
2,389,276 - Psest_2236 0.45 +0.3
2,389,276 - Psest_2236 0.45 +0.3
2,389,278 + Psest_2236 0.45 +0.3
2,389,279 - Psest_2236 0.45 -1.4
2,389,279 - Psest_2236 0.45 +1.8
2,389,279 - Psest_2236 0.45 +0.9
2,389,279 - Psest_2236 0.45 +0.2
2,389,386 + Psest_2236 0.50 -2.0
2,389,386 + Psest_2236 0.50 -0.8
2,389,386 + Psest_2236 0.50 -0.3
2,389,386 + Psest_2236 0.50 -2.7
2,389,386 + Psest_2236 0.50 +0.9
2,389,387 - Psest_2236 0.50 -0.0
2,389,387 - Psest_2236 0.50 -2.2
2,389,387 - Psest_2236 0.50 -0.4
2,389,512 + Psest_2236 0.56 +0.0
2,389,513 - Psest_2236 0.56 +1.2
2,389,513 - Psest_2236 0.56 -2.0
2,389,513 - Psest_2236 0.56 -1.1
2,389,513 - Psest_2236 0.56 -0.7
2,389,584 + Psest_2236 0.59 +1.1
2,389,585 - Psest_2236 0.59 -0.5
2,390,028 + Psest_2236 0.78 -1.2
2,390,028 + Psest_2236 0.78 +0.5
2,390,028 + Psest_2236 0.78 -0.3
2,390,028 + Psest_2236 0.78 -1.3
2,390,028 + Psest_2236 0.78 +0.0
2,390,029 - Psest_2236 0.78 -0.6
2,390,029 - Psest_2236 0.78 +0.6
2,390,029 - Psest_2236 0.78 -0.1
2,390,029 - Psest_2236 0.78 -0.3
2,390,029 - Psest_2236 0.78 +0.4
2,390,029 - Psest_2236 0.78 -1.1
2,390,055 + Psest_2236 0.79 -0.9
2,390,198 - Psest_2236 0.86 +0.2
2,390,326 + -0.0
2,390,326 + -1.6
2,390,352 + +2.3
2,390,352 + -0.4
2,390,353 - -1.0
2,390,353 - -1.4
2,390,353 - -1.6
2,390,358 + +0.2
2,390,358 + +0.1
2,390,358 + +1.0
2,390,358 + +0.5
2,390,358 + +0.2
2,390,359 - -2.6
2,390,359 - +1.7
2,390,359 - +0.2
2,390,359 - +1.6
2,390,359 - -0.2
2,390,359 - +0.5
2,390,359 - +0.7
2,390,359 - +2.0
2,390,359 - -0.4
2,390,359 - -1.4
2,390,359 - -0.1
2,390,359 - -0.6
2,390,741 + +0.6
2,390,762 + +0.7
2,390,762 + +1.5
2,390,763 - -0.3
2,390,763 - -0.3
2,390,844 + +0.4
2,390,845 - -0.4
2,390,888 + -1.9
2,390,889 - -0.2
2,390,889 - +0.4
2,390,958 + -1.6
2,391,042 + Psest_2238 0.20 -0.7
2,391,042 + Psest_2238 0.20 -0.7
2,391,042 + Psest_2238 0.20 -0.3
2,391,043 - Psest_2238 0.21 +0.4
2,391,058 - Psest_2238 0.24 +0.1
2,391,184 - Psest_2238 0.55 -2.7
2,391,225 + Psest_2238 0.65 +1.3
2,391,226 - Psest_2238 0.65 +0.1

Or see this region's nucleotide sequence