Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01815

Experiment: RCH2_defined_1percent_glucose with Chloride 400 mM and Betaine 100 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01805 and BWI76_RS01810 are separated by 8 nucleotidesBWI76_RS01810 and BWI76_RS01815 are separated by 144 nucleotidesBWI76_RS01815 and BWI76_RS01820 are separated by 191 nucleotides BWI76_RS01805: BWI76_RS01805 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 368,942 to 369,397 _RS01805 BWI76_RS01810: BWI76_RS01810 - N-acetyltransferase, at 369,406 to 369,915 _RS01810 BWI76_RS01815: BWI76_RS01815 - phosphate-starvation-inducible protein PsiE, at 370,060 to 370,470 _RS01815 BWI76_RS01820: BWI76_RS01820 - maltose ABC transporter, permease component 2 (MalG) (from data), at 370,662 to 371,552 _RS01820 Position (kb) 370 371Strain fitness (log2 ratio) -1 0 1at 369.126 kb on + strand, within BWI76_RS01805at 369.134 kb on - strand, within BWI76_RS01805at 369.314 kb on + strand, within BWI76_RS01805at 369.322 kb on + strand, within BWI76_RS01805at 369.388 kb on + strandat 369.388 kb on + strandat 369.388 kb on + strandat 369.503 kb on - strand, within BWI76_RS01810at 369.569 kb on - strand, within BWI76_RS01810at 369.599 kb on + strand, within BWI76_RS01810at 369.637 kb on - strand, within BWI76_RS01810at 369.689 kb on - strand, within BWI76_RS01810at 369.809 kb on - strand, within BWI76_RS01810at 369.841 kb on - strand, within BWI76_RS01810at 369.884 kb on - strandat 370.020 kb on + strandat 370.044 kb on + strandat 370.210 kb on - strand, within BWI76_RS01815at 370.322 kb on + strand, within BWI76_RS01815at 370.398 kb on - strand, within BWI76_RS01815at 370.592 kb on + strandat 370.722 kb on + strandat 370.741 kb on + strandat 370.820 kb on + strand, within BWI76_RS01820at 370.820 kb on + strand, within BWI76_RS01820at 370.828 kb on - strand, within BWI76_RS01820at 370.828 kb on - strand, within BWI76_RS01820at 370.835 kb on - strand, within BWI76_RS01820at 370.859 kb on + strand, within BWI76_RS01820at 370.937 kb on - strand, within BWI76_RS01820at 371.116 kb on - strand, within BWI76_RS01820at 371.182 kb on + strand, within BWI76_RS01820at 371.182 kb on + strand, within BWI76_RS01820at 371.239 kb on + strand, within BWI76_RS01820

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 400 mM and Betaine 100 uM
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369,126 + BWI76_RS01805 0.40 +0.2
369,134 - BWI76_RS01805 0.42 +0.1
369,314 + BWI76_RS01805 0.82 +0.1
369,322 + BWI76_RS01805 0.83 -0.1
369,388 + -0.2
369,388 + +1.1
369,388 + +0.2
369,503 - BWI76_RS01810 0.19 -0.3
369,569 - BWI76_RS01810 0.32 +0.2
369,599 + BWI76_RS01810 0.38 +0.5
369,637 - BWI76_RS01810 0.45 +0.4
369,689 - BWI76_RS01810 0.55 +0.8
369,809 - BWI76_RS01810 0.79 +0.7
369,841 - BWI76_RS01810 0.85 +1.0
369,884 - -0.0
370,020 + +0.8
370,044 + +0.4
370,210 - BWI76_RS01815 0.36 -0.5
370,322 + BWI76_RS01815 0.64 -0.8
370,398 - BWI76_RS01815 0.82 -1.6
370,592 + +0.0
370,722 + +0.7
370,741 + -0.1
370,820 + BWI76_RS01820 0.18 -0.1
370,820 + BWI76_RS01820 0.18 -0.2
370,828 - BWI76_RS01820 0.19 -0.5
370,828 - BWI76_RS01820 0.19 +0.0
370,835 - BWI76_RS01820 0.19 +0.3
370,859 + BWI76_RS01820 0.22 -0.3
370,937 - BWI76_RS01820 0.31 -0.6
371,116 - BWI76_RS01820 0.51 +0.5
371,182 + BWI76_RS01820 0.58 -0.3
371,182 + BWI76_RS01820 0.58 +0.1
371,239 + BWI76_RS01820 0.65 -0.6

Or see this region's nucleotide sequence