Experiment: Thallium(I) acetate 0.09 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3949 and Psest_3950 are separated by 8 nucleotides Psest_3950 and Psest_3951 overlap by 4 nucleotides Psest_3951 and Psest_3952 are separated by 78 nucleotides Psest_3952 and Psest_3953 are separated by 12 nucleotides
Psest_3949: Psest_3949 - Uncharacterised protein family (UPF0158)., at 4,118,055 to 4,118,480
_3949
Psest_3950: Psest_3950 - D-tyrosyl-tRNA(Tyr) deacylase, at 4,118,489 to 4,118,926
_3950
Psest_3951: Psest_3951 - proline iminopeptidase, Neisseria-type subfamily, at 4,118,923 to 4,119,897
_3951
Psest_3952: Psest_3952 - hypothetical protein, at 4,119,976 to 4,120,401
_3952
Psest_3953: Psest_3953 - Bacterial lipocalin, at 4,120,414 to 4,120,947
_3953
Position (kb) 4118
4119
4120 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4117.945 kb on - strand at 4117.945 kb on - strand at 4118.022 kb on + strand at 4118.022 kb on + strand at 4118.022 kb on + strand at 4118.022 kb on + strand at 4118.022 kb on + strand at 4118.022 kb on + strand at 4118.023 kb on - strand at 4118.023 kb on - strand at 4118.023 kb on - strand at 4118.023 kb on - strand at 4118.029 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.072 kb on - strand at 4118.072 kb on - strand at 4118.091 kb on + strand at 4118.091 kb on + strand at 4118.092 kb on - strand at 4118.092 kb on - strand at 4118.122 kb on - strand, within Psest_3949 at 4118.122 kb on - strand, within Psest_3949 at 4118.124 kb on + strand, within Psest_3949 at 4118.124 kb on + strand, within Psest_3949 at 4118.125 kb on - strand, within Psest_3949 at 4118.125 kb on - strand, within Psest_3949 at 4118.125 kb on - strand, within Psest_3949 at 4118.125 kb on - strand, within Psest_3949 at 4118.134 kb on + strand, within Psest_3949 at 4118.134 kb on + strand, within Psest_3949 at 4118.134 kb on + strand, within Psest_3949 at 4118.135 kb on - strand, within Psest_3949 at 4118.135 kb on - strand, within Psest_3949 at 4118.196 kb on + strand, within Psest_3949 at 4118.197 kb on - strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.308 kb on + strand, within Psest_3949 at 4118.309 kb on - strand, within Psest_3949 at 4118.400 kb on + strand, within Psest_3949 at 4118.604 kb on + strand, within Psest_3950 at 4118.604 kb on + strand, within Psest_3950 at 4118.605 kb on - strand, within Psest_3950 at 4118.605 kb on - strand, within Psest_3950 at 4118.610 kb on + strand, within Psest_3950 at 4118.610 kb on + strand, within Psest_3950 at 4118.610 kb on + strand, within Psest_3950 at 4118.610 kb on + strand, within Psest_3950 at 4118.610 kb on + strand, within Psest_3950 at 4118.611 kb on - strand, within Psest_3950 at 4118.613 kb on - strand, within Psest_3950 at 4118.613 kb on - strand, within Psest_3950 at 4118.772 kb on + strand, within Psest_3950 at 4118.882 kb on + strand, within Psest_3950 at 4118.883 kb on - strand at 4119.200 kb on + strand, within Psest_3951 at 4119.200 kb on + strand, within Psest_3951 at 4119.200 kb on + strand, within Psest_3951 at 4119.200 kb on + strand, within Psest_3951 at 4119.200 kb on + strand, within Psest_3951 at 4119.200 kb on + strand, within Psest_3951 at 4119.201 kb on - strand, within Psest_3951 at 4119.201 kb on - strand, within Psest_3951 at 4119.201 kb on - strand, within Psest_3951 at 4119.201 kb on - strand, within Psest_3951 at 4119.201 kb on - strand, within Psest_3951 at 4119.425 kb on + strand, within Psest_3951 at 4119.426 kb on - strand, within Psest_3951 at 4119.543 kb on - strand, within Psest_3951 at 4119.824 kb on + strand at 4119.824 kb on + strand at 4119.824 kb on + strand at 4119.824 kb on + strand at 4119.824 kb on + strand at 4119.825 kb on - strand at 4119.825 kb on - strand at 4119.825 kb on - strand at 4119.825 kb on - strand at 4119.867 kb on - strand at 4119.884 kb on + strand at 4119.953 kb on + strand at 4119.992 kb on + strand at 4120.121 kb on + strand, within Psest_3952 at 4120.121 kb on + strand, within Psest_3952 at 4120.121 kb on + strand, within Psest_3952 at 4120.121 kb on + strand, within Psest_3952 at 4120.121 kb on + strand, within Psest_3952 at 4120.121 kb on + strand, within Psest_3952 at 4120.121 kb on + strand, within Psest_3952 at 4120.121 kb on + strand, within Psest_3952 at 4120.122 kb on - strand, within Psest_3952 at 4120.122 kb on - strand, within Psest_3952 at 4120.122 kb on - strand, within Psest_3952 at 4120.153 kb on + strand, within Psest_3952 at 4120.255 kb on + strand, within Psest_3952 at 4120.256 kb on - strand, within Psest_3952 at 4120.256 kb on - strand, within Psest_3952 at 4120.256 kb on - strand, within Psest_3952 at 4120.445 kb on + strand at 4120.526 kb on + strand, within Psest_3953 at 4120.526 kb on + strand, within Psest_3953 at 4120.527 kb on - strand, within Psest_3953 at 4120.527 kb on - strand, within Psest_3953 at 4120.527 kb on - strand, within Psest_3953 at 4120.527 kb on - strand, within Psest_3953 at 4120.527 kb on - strand, within Psest_3953 at 4120.560 kb on + strand, within Psest_3953 at 4120.560 kb on + strand, within Psest_3953 at 4120.561 kb on - strand, within Psest_3953 at 4120.561 kb on - strand, within Psest_3953 at 4120.562 kb on + strand, within Psest_3953 at 4120.563 kb on - strand, within Psest_3953 at 4120.563 kb on - strand, within Psest_3953 at 4120.577 kb on + strand, within Psest_3953 at 4120.577 kb on + strand, within Psest_3953 at 4120.577 kb on + strand, within Psest_3953 at 4120.577 kb on + strand, within Psest_3953 at 4120.578 kb on - strand, within Psest_3953 at 4120.589 kb on + strand, within Psest_3953 at 4120.766 kb on + strand, within Psest_3953
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.09 mg/ml remove 4,117,945 - -1.7 4,117,945 - +1.5 4,118,022 + +1.9 4,118,022 + -0.8 4,118,022 + +0.3 4,118,022 + +0.7 4,118,022 + -0.3 4,118,022 + -0.8 4,118,023 - -1.1 4,118,023 - +1.3 4,118,023 - -1.1 4,118,023 - -1.0 4,118,029 + +0.2 4,118,071 + -1.2 4,118,071 + +0.4 4,118,071 + -1.0 4,118,071 + +0.3 4,118,071 + +0.2 4,118,071 + -0.2 4,118,071 + -0.6 4,118,072 - -0.1 4,118,072 - +0.3 4,118,091 + -0.0 4,118,091 + +1.3 4,118,092 - -0.2 4,118,092 - -0.8 4,118,122 - Psest_3949 0.16 +0.5 4,118,122 - Psest_3949 0.16 -0.9 4,118,124 + Psest_3949 0.16 +0.4 4,118,124 + Psest_3949 0.16 -1.2 4,118,125 - Psest_3949 0.16 +0.3 4,118,125 - Psest_3949 0.16 +0.7 4,118,125 - Psest_3949 0.16 -1.8 4,118,125 - Psest_3949 0.16 -1.3 4,118,134 + Psest_3949 0.19 +0.5 4,118,134 + Psest_3949 0.19 +0.4 4,118,134 + Psest_3949 0.19 +0.0 4,118,135 - Psest_3949 0.19 +1.1 4,118,135 - Psest_3949 0.19 -0.7 4,118,196 + Psest_3949 0.33 +1.2 4,118,197 - Psest_3949 0.33 -1.6 4,118,203 + Psest_3949 0.35 -1.5 4,118,203 + Psest_3949 0.35 +0.6 4,118,203 + Psest_3949 0.35 -0.2 4,118,203 + Psest_3949 0.35 -0.6 4,118,203 + Psest_3949 0.35 -0.7 4,118,203 + Psest_3949 0.35 +1.1 4,118,203 + Psest_3949 0.35 -0.8 4,118,203 + Psest_3949 0.35 +0.4 4,118,203 + Psest_3949 0.35 -0.3 4,118,203 + Psest_3949 0.35 -2.1 4,118,203 + Psest_3949 0.35 -0.4 4,118,204 - Psest_3949 0.35 -0.7 4,118,204 - Psest_3949 0.35 +1.0 4,118,204 - Psest_3949 0.35 -1.5 4,118,204 - Psest_3949 0.35 -0.2 4,118,204 - Psest_3949 0.35 -0.6 4,118,204 - Psest_3949 0.35 +0.3 4,118,204 - Psest_3949 0.35 -1.4 4,118,204 - Psest_3949 0.35 -0.8 4,118,204 - Psest_3949 0.35 +0.7 4,118,204 - Psest_3949 0.35 +0.1 4,118,204 - Psest_3949 0.35 +1.8 4,118,308 + Psest_3949 0.59 +1.5 4,118,309 - Psest_3949 0.60 -2.1 4,118,400 + Psest_3949 0.81 -2.0 4,118,604 + Psest_3950 0.26 +0.2 4,118,604 + Psest_3950 0.26 +1.2 4,118,605 - Psest_3950 0.26 +0.6 4,118,605 - Psest_3950 0.26 +0.2 4,118,610 + Psest_3950 0.28 -0.5 4,118,610 + Psest_3950 0.28 -0.4 4,118,610 + Psest_3950 0.28 -0.3 4,118,610 + Psest_3950 0.28 +1.5 4,118,610 + Psest_3950 0.28 +2.2 4,118,611 - Psest_3950 0.28 +1.1 4,118,613 - Psest_3950 0.28 -1.1 4,118,613 - Psest_3950 0.28 +2.2 4,118,772 + Psest_3950 0.65 +2.0 4,118,882 + Psest_3950 0.90 -2.0 4,118,883 - -1.8 4,119,200 + Psest_3951 0.28 +1.2 4,119,200 + Psest_3951 0.28 -0.7 4,119,200 + Psest_3951 0.28 -0.8 4,119,200 + Psest_3951 0.28 +1.0 4,119,200 + Psest_3951 0.28 -0.1 4,119,200 + Psest_3951 0.28 -0.3 4,119,201 - Psest_3951 0.29 +0.8 4,119,201 - Psest_3951 0.29 +0.7 4,119,201 - Psest_3951 0.29 +1.7 4,119,201 - Psest_3951 0.29 +1.1 4,119,201 - Psest_3951 0.29 +0.7 4,119,425 + Psest_3951 0.51 -0.9 4,119,426 - Psest_3951 0.52 +0.0 4,119,543 - Psest_3951 0.64 +2.0 4,119,824 + +1.0 4,119,824 + +0.9 4,119,824 + -1.7 4,119,824 + +1.3 4,119,824 + +0.8 4,119,825 - +0.3 4,119,825 - +2.2 4,119,825 - +2.1 4,119,825 - +0.7 4,119,867 - +1.2 4,119,884 + +1.0 4,119,953 + -1.2 4,119,992 + -1.5 4,120,121 + Psest_3952 0.34 +1.0 4,120,121 + Psest_3952 0.34 +0.3 4,120,121 + Psest_3952 0.34 +1.5 4,120,121 + Psest_3952 0.34 +0.2 4,120,121 + Psest_3952 0.34 +0.2 4,120,121 + Psest_3952 0.34 -0.6 4,120,121 + Psest_3952 0.34 -1.2 4,120,121 + Psest_3952 0.34 -1.3 4,120,122 - Psest_3952 0.34 +0.2 4,120,122 - Psest_3952 0.34 -0.5 4,120,122 - Psest_3952 0.34 -0.2 4,120,153 + Psest_3952 0.42 -1.9 4,120,255 + Psest_3952 0.65 -0.1 4,120,256 - Psest_3952 0.66 +1.0 4,120,256 - Psest_3952 0.66 -0.6 4,120,256 - Psest_3952 0.66 +0.9 4,120,445 + +1.0 4,120,526 + Psest_3953 0.21 +0.0 4,120,526 + Psest_3953 0.21 +0.9 4,120,527 - Psest_3953 0.21 +0.3 4,120,527 - Psest_3953 0.21 +0.9 4,120,527 - Psest_3953 0.21 -0.2 4,120,527 - Psest_3953 0.21 +2.0 4,120,527 - Psest_3953 0.21 +1.1 4,120,560 + Psest_3953 0.27 -2.1 4,120,560 + Psest_3953 0.27 -1.0 4,120,561 - Psest_3953 0.28 -0.1 4,120,561 - Psest_3953 0.28 -1.0 4,120,562 + Psest_3953 0.28 -0.0 4,120,563 - Psest_3953 0.28 -0.9 4,120,563 - Psest_3953 0.28 -0.7 4,120,577 + Psest_3953 0.31 +0.3 4,120,577 + Psest_3953 0.31 +0.5 4,120,577 + Psest_3953 0.31 +0.4 4,120,577 + Psest_3953 0.31 -3.2 4,120,578 - Psest_3953 0.31 -1.5 4,120,589 + Psest_3953 0.33 -1.8 4,120,766 + Psest_3953 0.66 +2.1
Or see this region's nucleotide sequence