Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1178

Experiment: Thallium(I) acetate 0.09 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1177 and Psest_1178 are separated by 32 nucleotidesPsest_1178 and Psest_1179 are separated by 328 nucleotides Psest_1177: Psest_1177 - pyruvate kinase, at 1,278,310 to 1,279,725 _1177 Psest_1178: Psest_1178 - D-glycerate 2-kinase (EC 2.7.1.-) (from data), at 1,279,758 to 1,281,029 _1178 Psest_1179: Psest_1179 - 2-hydroxy-3-oxopropionate reductase, at 1,281,358 to 1,282,248 _1179 Position (kb) 1279 1280 1281 1282Strain fitness (log2 ratio) -2 -1 0 1 2at 1279.699 kb on + strandat 1279.699 kb on + strandat 1279.699 kb on + strandat 1279.699 kb on + strandat 1279.699 kb on + strandat 1279.699 kb on + strandat 1279.699 kb on + strandat 1279.699 kb on + strandat 1279.700 kb on - strandat 1279.700 kb on - strandat 1279.700 kb on - strandat 1279.700 kb on - strandat 1279.700 kb on - strandat 1279.700 kb on - strandat 1279.759 kb on + strandat 1279.852 kb on + strandat 1279.853 kb on - strandat 1279.853 kb on - strandat 1279.918 kb on + strand, within Psest_1178at 1279.919 kb on - strand, within Psest_1178at 1279.919 kb on - strand, within Psest_1178at 1279.993 kb on + strand, within Psest_1178at 1279.993 kb on + strand, within Psest_1178at 1280.488 kb on + strand, within Psest_1178at 1280.488 kb on + strand, within Psest_1178at 1280.488 kb on + strand, within Psest_1178at 1280.488 kb on + strand, within Psest_1178at 1280.489 kb on - strand, within Psest_1178at 1280.489 kb on - strand, within Psest_1178at 1280.489 kb on - strand, within Psest_1178at 1280.489 kb on - strand, within Psest_1178at 1280.489 kb on - strand, within Psest_1178at 1280.489 kb on - strand, within Psest_1178at 1280.494 kb on + strand, within Psest_1178at 1280.494 kb on + strand, within Psest_1178at 1280.495 kb on - strand, within Psest_1178at 1280.495 kb on - strand, within Psest_1178at 1280.680 kb on - strand, within Psest_1178at 1281.043 kb on + strandat 1281.043 kb on + strandat 1281.043 kb on + strandat 1281.043 kb on + strandat 1281.043 kb on + strandat 1281.043 kb on + strandat 1281.043 kb on + strandat 1281.044 kb on - strandat 1281.044 kb on - strandat 1281.044 kb on - strandat 1281.044 kb on - strandat 1281.044 kb on - strandat 1281.251 kb on - strandat 1281.360 kb on - strandat 1281.902 kb on + strand, within Psest_1179at 1281.902 kb on + strand, within Psest_1179

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.09 mg/ml
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1,279,699 + +0.6
1,279,699 + -0.6
1,279,699 + -0.8
1,279,699 + -0.0
1,279,699 + -2.1
1,279,699 + +0.4
1,279,699 + +0.5
1,279,699 + +2.4
1,279,700 - +0.4
1,279,700 - +0.2
1,279,700 - -0.8
1,279,700 - +0.7
1,279,700 - -0.2
1,279,700 - -0.7
1,279,759 + -1.0
1,279,852 + -0.6
1,279,853 - +0.4
1,279,853 - +1.0
1,279,918 + Psest_1178 0.13 +0.8
1,279,919 - Psest_1178 0.13 +2.4
1,279,919 - Psest_1178 0.13 +2.5
1,279,993 + Psest_1178 0.18 +1.2
1,279,993 + Psest_1178 0.18 +1.3
1,280,488 + Psest_1178 0.57 -0.6
1,280,488 + Psest_1178 0.57 +2.0
1,280,488 + Psest_1178 0.57 -0.0
1,280,488 + Psest_1178 0.57 -0.4
1,280,489 - Psest_1178 0.57 -1.0
1,280,489 - Psest_1178 0.57 +0.7
1,280,489 - Psest_1178 0.57 -0.5
1,280,489 - Psest_1178 0.57 -0.4
1,280,489 - Psest_1178 0.57 +0.6
1,280,489 - Psest_1178 0.57 +1.4
1,280,494 + Psest_1178 0.58 +0.4
1,280,494 + Psest_1178 0.58 -0.2
1,280,495 - Psest_1178 0.58 +0.4
1,280,495 - Psest_1178 0.58 +1.3
1,280,680 - Psest_1178 0.72 +1.2
1,281,043 + -0.5
1,281,043 + +1.0
1,281,043 + -0.9
1,281,043 + -0.1
1,281,043 + -0.4
1,281,043 + +1.2
1,281,043 + -2.0
1,281,044 - -1.9
1,281,044 - +0.0
1,281,044 - -0.0
1,281,044 - -0.4
1,281,044 - -0.0
1,281,251 - +0.9
1,281,360 - +0.4
1,281,902 + Psest_1179 0.61 -1.4
1,281,902 + Psest_1179 0.61 -1.2

Or see this region's nucleotide sequence