Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2916

Experiment: Thallium(I) acetate 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2915 and Psest_2916 are separated by 178 nucleotidesPsest_2916 and Psest_2917 are separated by 77 nucleotidesPsest_2917 and Psest_2918 are separated by 129 nucleotides Psest_2915: Psest_2915 - Glucose/sorbosone dehydrogenases, at 3,108,380 to 3,109,528 _2915 Psest_2916: Psest_2916 - hypothetical protein, at 3,109,707 to 3,109,886 _2916 Psest_2917: Psest_2917 - 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases, at 3,109,964 to 3,110,689 _2917 Psest_2918: Psest_2918 - amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-), at 3,110,819 to 3,111,589 _2918 Position (kb) 3109 3110Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3108.717 kb on + strand, within Psest_2915at 3108.717 kb on + strand, within Psest_2915at 3108.717 kb on + strand, within Psest_2915at 3108.717 kb on + strand, within Psest_2915at 3108.718 kb on - strand, within Psest_2915at 3108.718 kb on - strand, within Psest_2915at 3108.718 kb on - strand, within Psest_2915at 3108.718 kb on - strand, within Psest_2915at 3108.718 kb on - strand, within Psest_2915at 3108.718 kb on - strand, within Psest_2915at 3108.718 kb on - strand, within Psest_2915at 3108.718 kb on - strand, within Psest_2915at 3108.750 kb on + strand, within Psest_2915at 3108.750 kb on + strand, within Psest_2915at 3109.188 kb on + strand, within Psest_2915at 3109.188 kb on + strand, within Psest_2915at 3109.188 kb on + strand, within Psest_2915at 3109.188 kb on + strand, within Psest_2915at 3109.278 kb on - strand, within Psest_2915at 3109.278 kb on - strand, within Psest_2915at 3109.278 kb on - strand, within Psest_2915at 3109.278 kb on - strand, within Psest_2915at 3109.567 kb on + strandat 3109.641 kb on + strandat 3109.668 kb on + strandat 3109.671 kb on - strandat 3109.690 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on + strandat 3110.036 kb on - strandat 3110.037 kb on - strand, within Psest_2917at 3110.037 kb on - strand, within Psest_2917at 3110.037 kb on - strand, within Psest_2917at 3110.037 kb on - strand, within Psest_2917at 3110.037 kb on - strand, within Psest_2917at 3110.405 kb on + strand, within Psest_2917at 3110.405 kb on + strand, within Psest_2917at 3110.405 kb on + strand, within Psest_2917at 3110.405 kb on + strand, within Psest_2917at 3110.405 kb on + strand, within Psest_2917at 3110.405 kb on + strand, within Psest_2917at 3110.405 kb on + strand, within Psest_2917at 3110.405 kb on + strand, within Psest_2917at 3110.405 kb on + strand, within Psest_2917at 3110.406 kb on - strand, within Psest_2917at 3110.406 kb on - strand, within Psest_2917at 3110.406 kb on - strand, within Psest_2917at 3110.741 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.08 mg/ml
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3,108,717 + Psest_2915 0.29 -1.3
3,108,717 + Psest_2915 0.29 -1.2
3,108,717 + Psest_2915 0.29 +0.3
3,108,717 + Psest_2915 0.29 -0.5
3,108,718 - Psest_2915 0.29 +2.6
3,108,718 - Psest_2915 0.29 +0.6
3,108,718 - Psest_2915 0.29 +0.5
3,108,718 - Psest_2915 0.29 -1.0
3,108,718 - Psest_2915 0.29 +0.8
3,108,718 - Psest_2915 0.29 -1.4
3,108,718 - Psest_2915 0.29 -0.2
3,108,718 - Psest_2915 0.29 -2.6
3,108,750 + Psest_2915 0.32 -0.0
3,108,750 + Psest_2915 0.32 +1.0
3,109,188 + Psest_2915 0.70 -0.6
3,109,188 + Psest_2915 0.70 -0.9
3,109,188 + Psest_2915 0.70 -1.3
3,109,188 + Psest_2915 0.70 +1.4
3,109,278 - Psest_2915 0.78 +0.4
3,109,278 - Psest_2915 0.78 -0.6
3,109,278 - Psest_2915 0.78 -0.7
3,109,278 - Psest_2915 0.78 -0.1
3,109,567 + +1.9
3,109,641 + +1.4
3,109,668 + -1.8
3,109,671 - -2.1
3,109,690 + -0.7
3,110,036 + +0.4
3,110,036 + +0.6
3,110,036 + -2.4
3,110,036 + -0.4
3,110,036 + -1.2
3,110,036 + -0.9
3,110,036 + +0.3
3,110,036 + +1.2
3,110,036 + +0.7
3,110,036 + +0.5
3,110,036 + +0.5
3,110,036 + +1.1
3,110,036 + -0.5
3,110,036 + +0.1
3,110,036 - -0.7
3,110,037 - Psest_2917 0.10 +1.1
3,110,037 - Psest_2917 0.10 +0.3
3,110,037 - Psest_2917 0.10 -0.2
3,110,037 - Psest_2917 0.10 +0.0
3,110,037 - Psest_2917 0.10 -1.0
3,110,405 + Psest_2917 0.61 +3.5
3,110,405 + Psest_2917 0.61 +1.6
3,110,405 + Psest_2917 0.61 +0.5
3,110,405 + Psest_2917 0.61 +1.2
3,110,405 + Psest_2917 0.61 -1.6
3,110,405 + Psest_2917 0.61 -0.4
3,110,405 + Psest_2917 0.61 +1.4
3,110,405 + Psest_2917 0.61 -3.6
3,110,405 + Psest_2917 0.61 +1.6
3,110,406 - Psest_2917 0.61 -0.5
3,110,406 - Psest_2917 0.61 +0.3
3,110,406 - Psest_2917 0.61 +1.2
3,110,741 - -0.1

Or see this region's nucleotide sequence