Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2888

Experiment: Thallium(I) acetate 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2887 and Psest_2888 are separated by 31 nucleotidesPsest_2888 and Psest_2889 are separated by 257 nucleotides Psest_2887: Psest_2887 - Uncharacterized protein conserved in bacteria, at 3,079,184 to 3,080,167 _2887 Psest_2888: Psest_2888 - Transcriptional activator of acetoin/glycerol metabolism, at 3,080,199 to 3,082,088 _2888 Psest_2889: Psest_2889 - Predicted flavoprotein involved in K+ transport, at 3,082,346 to 3,084,226 _2889 Position (kb) 3080 3081 3082 3083Strain fitness (log2 ratio) -2 -1 0 1 2at 3079.448 kb on + strand, within Psest_2887at 3079.449 kb on - strand, within Psest_2887at 3079.449 kb on - strand, within Psest_2887at 3079.449 kb on - strand, within Psest_2887at 3079.449 kb on - strand, within Psest_2887at 3079.763 kb on + strand, within Psest_2887at 3079.956 kb on - strand, within Psest_2887at 3080.391 kb on + strand, within Psest_2888at 3080.392 kb on - strand, within Psest_2888at 3080.629 kb on + strand, within Psest_2888at 3080.629 kb on + strand, within Psest_2888at 3080.630 kb on - strand, within Psest_2888at 3080.630 kb on - strand, within Psest_2888at 3081.181 kb on + strand, within Psest_2888at 3081.182 kb on - strand, within Psest_2888at 3081.182 kb on - strand, within Psest_2888at 3081.182 kb on - strand, within Psest_2888at 3081.403 kb on + strand, within Psest_2888at 3081.403 kb on + strand, within Psest_2888at 3081.403 kb on + strand, within Psest_2888at 3081.404 kb on - strand, within Psest_2888at 3081.404 kb on - strand, within Psest_2888at 3081.404 kb on - strand, within Psest_2888at 3082.176 kb on + strandat 3082.238 kb on + strandat 3082.321 kb on - strandat 3082.727 kb on + strand, within Psest_2889at 3082.727 kb on + strand, within Psest_2889at 3082.727 kb on + strand, within Psest_2889at 3082.727 kb on + strand, within Psest_2889at 3082.916 kb on + strand, within Psest_2889at 3082.917 kb on - strand, within Psest_2889at 3083.087 kb on + strand, within Psest_2889

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.08 mg/ml
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3,079,448 + Psest_2887 0.27 -1.5
3,079,449 - Psest_2887 0.27 +1.9
3,079,449 - Psest_2887 0.27 +1.3
3,079,449 - Psest_2887 0.27 -0.3
3,079,449 - Psest_2887 0.27 -0.8
3,079,763 + Psest_2887 0.59 +1.0
3,079,956 - Psest_2887 0.78 -1.1
3,080,391 + Psest_2888 0.10 -2.4
3,080,392 - Psest_2888 0.10 +0.1
3,080,629 + Psest_2888 0.23 -0.9
3,080,629 + Psest_2888 0.23 +1.2
3,080,630 - Psest_2888 0.23 -1.3
3,080,630 - Psest_2888 0.23 +0.1
3,081,181 + Psest_2888 0.52 -1.1
3,081,182 - Psest_2888 0.52 -0.6
3,081,182 - Psest_2888 0.52 +1.4
3,081,182 - Psest_2888 0.52 -1.0
3,081,403 + Psest_2888 0.64 +0.0
3,081,403 + Psest_2888 0.64 +0.0
3,081,403 + Psest_2888 0.64 -0.4
3,081,404 - Psest_2888 0.64 -0.8
3,081,404 - Psest_2888 0.64 -0.7
3,081,404 - Psest_2888 0.64 -1.5
3,082,176 + -0.6
3,082,238 + -1.4
3,082,321 - -1.4
3,082,727 + Psest_2889 0.20 -1.1
3,082,727 + Psest_2889 0.20 +0.5
3,082,727 + Psest_2889 0.20 -0.4
3,082,727 + Psest_2889 0.20 +1.7
3,082,916 + Psest_2889 0.30 -1.0
3,082,917 - Psest_2889 0.30 +0.6
3,083,087 + Psest_2889 0.39 -0.4

Or see this region's nucleotide sequence