Experiment: Post-colonization (Day 2) - Cage7;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0761 and BT0762 are separated by 32 nucleotides BT0762 and tRNA-Arg are separated by 135 nucleotides tRNA-Arg and BT0763 are separated by 292 nucleotides
BT0761: BT0761 - conserved hypothetical protein (NCBI ptt file), at 949,431 to 951,479
BT0761
BT0762: BT0762 - hypothetical protein (NCBI ptt file), at 951,512 to 951,697
BT0762
BT_t09: tRNA-Arg - tRNA-Arg (RefSeq), at 951,833 to 951,906
tRNA-Arg
BT0763: BT0763 - conserved hypothetical protein (NCBI ptt file), at 952,199 to 953,884
BT0763
Position (kb) 951
952 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 950.760 kb on + strand, within BT0761 at 950.830 kb on - strand, within BT0761 at 950.831 kb on + strand, within BT0761 at 950.847 kb on + strand, within BT0761 at 950.847 kb on + strand, within BT0761 at 950.848 kb on - strand, within BT0761 at 950.936 kb on + strand, within BT0761 at 951.035 kb on + strand, within BT0761 at 951.084 kb on + strand, within BT0761 at 951.111 kb on - strand, within BT0761 at 951.132 kb on + strand, within BT0761 at 951.133 kb on - strand, within BT0761 at 951.261 kb on - strand, within BT0761 at 951.419 kb on + strand at 951.505 kb on - strand at 951.509 kb on + strand at 951.510 kb on - strand at 951.513 kb on + strand at 951.565 kb on - strand, within BT0762 at 951.565 kb on - strand, within BT0762 at 951.651 kb on + strand, within BT0762 at 951.651 kb on + strand, within BT0762 at 951.663 kb on + strand, within BT0762 at 951.666 kb on - strand, within BT0762 at 952.057 kb on - strand at 952.093 kb on - strand at 952.100 kb on + strand at 952.264 kb on + strand at 952.372 kb on + strand, within BT0763 at 952.432 kb on + strand, within BT0763 at 952.447 kb on + strand, within BT0763 at 952.471 kb on + strand, within BT0763 at 952.512 kb on - strand, within BT0763 at 952.513 kb on + strand, within BT0763 at 952.538 kb on - strand, within BT0763
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 2) - Cage7;Mouse2 remove 950,760 + BT0761 0.65 -1.8 950,830 - BT0761 0.68 -1.3 950,831 + BT0761 0.68 +0.3 950,847 + BT0761 0.69 +1.0 950,847 + BT0761 0.69 -1.1 950,848 - BT0761 0.69 -1.5 950,936 + BT0761 0.73 +0.8 951,035 + BT0761 0.78 +0.6 951,084 + BT0761 0.81 -1.5 951,111 - BT0761 0.82 -0.2 951,132 + BT0761 0.83 -0.0 951,133 - BT0761 0.83 +2.0 951,261 - BT0761 0.89 +0.8 951,419 + -2.5 951,505 - +1.3 951,509 + -0.3 951,510 - -0.0 951,513 + -0.0 951,565 - BT0762 0.28 +1.0 951,565 - BT0762 0.28 -2.1 951,651 + BT0762 0.75 +2.0 951,651 + BT0762 0.75 -2.6 951,663 + BT0762 0.81 +3.3 951,666 - BT0762 0.83 -1.5 952,057 - +2.0 952,093 - -1.3 952,100 + +0.7 952,264 + -0.0 952,372 + BT0763 0.10 +1.0 952,432 + BT0763 0.14 -1.6 952,447 + BT0763 0.15 -0.0 952,471 + BT0763 0.16 +1.1 952,512 - BT0763 0.19 +1.7 952,513 + BT0763 0.19 -0.0 952,538 - BT0763 0.20 -0.6
Or see this region's nucleotide sequence