Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05590

Experiment: RCH2_defined_1percent_glucose with Betaine 100 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05585 and BWI76_RS05590 overlap by 8 nucleotidesBWI76_RS05590 and BWI76_RS05595 overlap by 10 nucleotides BWI76_RS05580: BWI76_RS05580 - group 1 glycosyl transferase, at 1,168,111 to 1,169,325 _RS05580 BWI76_RS05585: BWI76_RS05585 - family 2 glycosyl transferase, at 1,169,306 to 1,170,331 _RS05585 BWI76_RS05590: BWI76_RS05590 - hypothetical protein, at 1,170,324 to 1,171,706 _RS05590 BWI76_RS05595: BWI76_RS05595 - capsular polysaccharide biosynthesis protein, at 1,171,697 to 1,172,914 _RS05595 Position (kb) 1170 1171 1172Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1169.355 kb on - strandat 1169.356 kb on - strandat 1169.364 kb on - strandat 1169.374 kb on - strandat 1169.393 kb on + strandat 1169.395 kb on + strandat 1169.399 kb on - strandat 1169.401 kb on - strandat 1169.401 kb on - strandat 1169.401 kb on - strandat 1169.410 kb on - strand, within BWI76_RS05585at 1169.416 kb on - strand, within BWI76_RS05585at 1169.416 kb on - strand, within BWI76_RS05585at 1169.416 kb on - strand, within BWI76_RS05585at 1169.416 kb on - strand, within BWI76_RS05585at 1169.416 kb on - strand, within BWI76_RS05585at 1169.447 kb on + strand, within BWI76_RS05585at 1169.454 kb on - strand, within BWI76_RS05585at 1169.455 kb on - strand, within BWI76_RS05585at 1169.455 kb on - strand, within BWI76_RS05585at 1169.490 kb on - strand, within BWI76_RS05585at 1169.505 kb on + strand, within BWI76_RS05585at 1169.568 kb on + strand, within BWI76_RS05585at 1169.593 kb on - strand, within BWI76_RS05585at 1169.632 kb on + strand, within BWI76_RS05585at 1169.653 kb on + strand, within BWI76_RS05585at 1169.713 kb on + strand, within BWI76_RS05585at 1169.726 kb on - strand, within BWI76_RS05585at 1169.800 kb on - strand, within BWI76_RS05585at 1169.803 kb on + strand, within BWI76_RS05585at 1169.811 kb on - strand, within BWI76_RS05585at 1169.826 kb on - strand, within BWI76_RS05585at 1169.826 kb on - strand, within BWI76_RS05585at 1169.826 kb on - strand, within BWI76_RS05585at 1169.861 kb on + strand, within BWI76_RS05585at 1169.892 kb on + strand, within BWI76_RS05585at 1169.900 kb on - strand, within BWI76_RS05585at 1169.963 kb on - strand, within BWI76_RS05585at 1170.022 kb on - strand, within BWI76_RS05585at 1170.109 kb on + strand, within BWI76_RS05585at 1170.228 kb on + strand, within BWI76_RS05585at 1170.228 kb on + strand, within BWI76_RS05585at 1170.236 kb on - strandat 1170.275 kb on + strandat 1170.438 kb on + strandat 1170.440 kb on + strandat 1170.448 kb on - strandat 1170.448 kb on - strandat 1170.490 kb on + strand, within BWI76_RS05590at 1170.490 kb on + strand, within BWI76_RS05590at 1170.490 kb on + strand, within BWI76_RS05590at 1170.498 kb on - strand, within BWI76_RS05590at 1170.516 kb on + strand, within BWI76_RS05590at 1170.524 kb on - strand, within BWI76_RS05590at 1170.545 kb on - strand, within BWI76_RS05590at 1170.571 kb on - strand, within BWI76_RS05590at 1170.571 kb on - strand, within BWI76_RS05590at 1170.571 kb on - strand, within BWI76_RS05590at 1170.653 kb on + strand, within BWI76_RS05590at 1170.669 kb on + strand, within BWI76_RS05590at 1170.715 kb on - strand, within BWI76_RS05590at 1170.996 kb on + strand, within BWI76_RS05590at 1171.020 kb on - strand, within BWI76_RS05590at 1171.020 kb on - strand, within BWI76_RS05590at 1171.165 kb on - strand, within BWI76_RS05590at 1171.735 kb on - strandat 1171.786 kb on + strandat 1171.822 kb on + strand, within BWI76_RS05595at 1171.825 kb on - strand, within BWI76_RS05595at 1171.827 kb on + strand, within BWI76_RS05595at 1171.835 kb on - strand, within BWI76_RS05595at 1172.055 kb on + strand, within BWI76_RS05595at 1172.370 kb on - strand, within BWI76_RS05595at 1172.451 kb on + strand, within BWI76_RS05595at 1172.451 kb on + strand, within BWI76_RS05595at 1172.451 kb on + strand, within BWI76_RS05595at 1172.451 kb on + strand, within BWI76_RS05595at 1172.459 kb on - strand, within BWI76_RS05595at 1172.485 kb on + strand, within BWI76_RS05595

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Betaine 100 uM
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1,169,355 - -0.5
1,169,356 - -0.3
1,169,364 - -0.1
1,169,374 - +0.6
1,169,393 + -1.2
1,169,395 + -0.1
1,169,399 - -0.2
1,169,401 - +0.2
1,169,401 - -0.3
1,169,401 - +1.1
1,169,410 - BWI76_RS05585 0.10 +0.1
1,169,416 - BWI76_RS05585 0.11 +0.5
1,169,416 - BWI76_RS05585 0.11 -0.0
1,169,416 - BWI76_RS05585 0.11 +1.8
1,169,416 - BWI76_RS05585 0.11 -0.5
1,169,416 - BWI76_RS05585 0.11 -0.0
1,169,447 + BWI76_RS05585 0.14 -2.0
1,169,454 - BWI76_RS05585 0.14 +0.4
1,169,455 - BWI76_RS05585 0.15 +0.9
1,169,455 - BWI76_RS05585 0.15 -0.5
1,169,490 - BWI76_RS05585 0.18 -1.5
1,169,505 + BWI76_RS05585 0.19 +1.7
1,169,568 + BWI76_RS05585 0.26 +0.3
1,169,593 - BWI76_RS05585 0.28 +2.8
1,169,632 + BWI76_RS05585 0.32 -0.0
1,169,653 + BWI76_RS05585 0.34 -0.2
1,169,713 + BWI76_RS05585 0.40 +0.1
1,169,726 - BWI76_RS05585 0.41 +0.2
1,169,800 - BWI76_RS05585 0.48 +0.1
1,169,803 + BWI76_RS05585 0.48 +0.8
1,169,811 - BWI76_RS05585 0.49 +0.2
1,169,826 - BWI76_RS05585 0.51 -1.3
1,169,826 - BWI76_RS05585 0.51 -0.1
1,169,826 - BWI76_RS05585 0.51 +0.4
1,169,861 + BWI76_RS05585 0.54 -0.6
1,169,892 + BWI76_RS05585 0.57 +0.8
1,169,900 - BWI76_RS05585 0.58 -0.4
1,169,963 - BWI76_RS05585 0.64 -0.2
1,170,022 - BWI76_RS05585 0.70 +1.1
1,170,109 + BWI76_RS05585 0.78 -0.0
1,170,228 + BWI76_RS05585 0.90 -0.9
1,170,228 + BWI76_RS05585 0.90 -2.6
1,170,236 - +0.4
1,170,275 + -0.6
1,170,438 + +0.4
1,170,440 + +1.0
1,170,448 - -0.3
1,170,448 - +2.4
1,170,490 + BWI76_RS05590 0.12 -1.5
1,170,490 + BWI76_RS05590 0.12 +0.4
1,170,490 + BWI76_RS05590 0.12 -0.3
1,170,498 - BWI76_RS05590 0.13 +0.7
1,170,516 + BWI76_RS05590 0.14 -0.9
1,170,524 - BWI76_RS05590 0.14 +0.3
1,170,545 - BWI76_RS05590 0.16 +1.8
1,170,571 - BWI76_RS05590 0.18 +0.3
1,170,571 - BWI76_RS05590 0.18 +0.5
1,170,571 - BWI76_RS05590 0.18 -2.3
1,170,653 + BWI76_RS05590 0.24 +1.0
1,170,669 + BWI76_RS05590 0.25 +0.0
1,170,715 - BWI76_RS05590 0.28 +0.8
1,170,996 + BWI76_RS05590 0.49 +0.9
1,171,020 - BWI76_RS05590 0.50 -0.2
1,171,020 - BWI76_RS05590 0.50 +0.6
1,171,165 - BWI76_RS05590 0.61 +0.8
1,171,735 - +0.1
1,171,786 + +0.3
1,171,822 + BWI76_RS05595 0.10 +1.4
1,171,825 - BWI76_RS05595 0.11 +0.3
1,171,827 + BWI76_RS05595 0.11 -0.3
1,171,835 - BWI76_RS05595 0.11 -0.1
1,172,055 + BWI76_RS05595 0.29 -1.0
1,172,370 - BWI76_RS05595 0.55 +0.4
1,172,451 + BWI76_RS05595 0.62 -0.9
1,172,451 + BWI76_RS05595 0.62 +0.1
1,172,451 + BWI76_RS05595 0.62 +0.5
1,172,451 + BWI76_RS05595 0.62 +0.2
1,172,459 - BWI76_RS05595 0.63 -0.4
1,172,485 + BWI76_RS05595 0.65 +0.3

Or see this region's nucleotide sequence