Experiment: RCH2_defined_1percent_glucose with Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13750 and BWI76_RS13755 are separated by 41 nucleotides BWI76_RS13755 and BWI76_RS13760 overlap by 1 nucleotides BWI76_RS13760 and BWI76_RS13765 are separated by 356 nucleotides BWI76_RS13765 and BWI76_RS13770 are separated by 5 nucleotides
BWI76_RS13750: BWI76_RS13750 - formate dehydrogenase, at 2,868,274 to 2,868,930
_RS13750
BWI76_RS13755: BWI76_RS13755 - hypothetical protein, at 2,868,972 to 2,869,295
_RS13755
BWI76_RS13760: BWI76_RS13760 - hypothetical protein, at 2,869,295 to 2,869,483
_RS13760
BWI76_RS13765: BWI76_RS13765 - MFS transporter AraJ, at 2,869,840 to 2,870,991
_RS13765
BWI76_RS13770: BWI76_RS13770 - alkylhydroperoxidase domain protein, at 2,870,997 to 2,872,088
_RS13770
Position (kb)
2869
2870
2871 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2868.865 kb on - strand at 2868.883 kb on + strand at 2868.886 kb on - strand at 2868.931 kb on + strand at 2868.960 kb on + strand at 2868.968 kb on - strand at 2868.970 kb on + strand at 2868.978 kb on - strand at 2869.189 kb on - strand, within BWI76_RS13755 at 2869.191 kb on + strand, within BWI76_RS13755 at 2869.264 kb on + strand at 2869.265 kb on + strand at 2869.293 kb on + strand at 2869.303 kb on + strand at 2869.310 kb on + strand at 2869.310 kb on - strand at 2869.387 kb on - strand, within BWI76_RS13760 at 2869.392 kb on - strand at 2869.393 kb on + strand, within BWI76_RS13760 at 2869.435 kb on - strand at 2869.460 kb on + strand, within BWI76_RS13760 at 2869.468 kb on - strand at 2869.503 kb on - strand at 2869.549 kb on + strand at 2869.549 kb on + strand at 2869.549 kb on + strand at 2869.554 kb on + strand at 2869.557 kb on - strand at 2869.562 kb on - strand at 2869.581 kb on - strand at 2869.656 kb on + strand at 2869.661 kb on + strand at 2869.663 kb on + strand at 2869.664 kb on - strand at 2869.666 kb on + strand at 2869.669 kb on - strand at 2869.669 kb on - strand at 2869.679 kb on - strand at 2869.679 kb on - strand at 2869.993 kb on + strand, within BWI76_RS13765 at 2870.009 kb on + strand, within BWI76_RS13765 at 2870.014 kb on + strand, within BWI76_RS13765 at 2870.101 kb on + strand, within BWI76_RS13765 at 2870.288 kb on - strand, within BWI76_RS13765 at 2870.288 kb on - strand, within BWI76_RS13765 at 2870.342 kb on - strand, within BWI76_RS13765 at 2870.347 kb on + strand, within BWI76_RS13765 at 2870.352 kb on + strand, within BWI76_RS13765 at 2870.355 kb on - strand, within BWI76_RS13765 at 2870.355 kb on - strand, within BWI76_RS13765 at 2870.472 kb on - strand, within BWI76_RS13765 at 2870.501 kb on + strand, within BWI76_RS13765 at 2870.501 kb on - strand, within BWI76_RS13765 at 2870.700 kb on + strand, within BWI76_RS13765 at 2870.700 kb on + strand, within BWI76_RS13765 at 2870.708 kb on - strand, within BWI76_RS13765 at 2870.708 kb on - strand, within BWI76_RS13765 at 2870.708 kb on - strand, within BWI76_RS13765 at 2870.743 kb on + strand, within BWI76_RS13765 at 2870.765 kb on - strand, within BWI76_RS13765 at 2870.806 kb on + strand, within BWI76_RS13765 at 2870.906 kb on + strand at 2871.274 kb on + strand, within BWI76_RS13770 at 2871.753 kb on - strand, within BWI76_RS13770 at 2871.838 kb on + strand, within BWI76_RS13770
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 600 mM remove 2,868,865 - +1.3 2,868,883 + +0.1 2,868,886 - +1.0 2,868,931 + -0.6 2,868,960 + -1.2 2,868,968 - -1.2 2,868,970 + +1.3 2,868,978 - +0.6 2,869,189 - BWI76_RS13755 0.67 -1.7 2,869,191 + BWI76_RS13755 0.68 +1.1 2,869,264 + -0.9 2,869,265 + +2.1 2,869,293 + +0.1 2,869,303 + -0.3 2,869,310 + +1.4 2,869,310 - +0.7 2,869,387 - BWI76_RS13760 0.49 +0.1 2,869,392 - -0.5 2,869,393 + BWI76_RS13760 0.52 -0.9 2,869,435 - -0.5 2,869,460 + BWI76_RS13760 0.87 +1.1 2,869,468 - -0.9 2,869,503 - +2.1 2,869,549 + -0.3 2,869,549 + +0.8 2,869,549 + +2.5 2,869,554 + +0.5 2,869,557 - -1.5 2,869,562 - +1.1 2,869,581 - -0.2 2,869,656 + +0.1 2,869,661 + +1.3 2,869,663 + +0.5 2,869,664 - -0.3 2,869,666 + -1.5 2,869,669 - +0.1 2,869,669 - -0.5 2,869,679 - +0.1 2,869,679 - -0.1 2,869,993 + BWI76_RS13765 0.13 -1.0 2,870,009 + BWI76_RS13765 0.15 -2.0 2,870,014 + BWI76_RS13765 0.15 -1.0 2,870,101 + BWI76_RS13765 0.23 -1.6 2,870,288 - BWI76_RS13765 0.39 -2.2 2,870,288 - BWI76_RS13765 0.39 -1.5 2,870,342 - BWI76_RS13765 0.44 +1.0 2,870,347 + BWI76_RS13765 0.44 -0.4 2,870,352 + BWI76_RS13765 0.44 -1.5 2,870,355 - BWI76_RS13765 0.45 -1.6 2,870,355 - BWI76_RS13765 0.45 -0.4 2,870,472 - BWI76_RS13765 0.55 +0.3 2,870,501 + BWI76_RS13765 0.57 -1.8 2,870,501 - BWI76_RS13765 0.57 -0.1 2,870,700 + BWI76_RS13765 0.75 -0.9 2,870,700 + BWI76_RS13765 0.75 -3.2 2,870,708 - BWI76_RS13765 0.75 +1.1 2,870,708 - BWI76_RS13765 0.75 +0.2 2,870,708 - BWI76_RS13765 0.75 +1.1 2,870,743 + BWI76_RS13765 0.78 +0.5 2,870,765 - BWI76_RS13765 0.80 -1.0 2,870,806 + BWI76_RS13765 0.84 -0.3 2,870,906 + -0.9 2,871,274 + BWI76_RS13770 0.25 +0.2 2,871,753 - BWI76_RS13770 0.69 +0.4 2,871,838 + BWI76_RS13770 0.77 -1.6
Or see this region's nucleotide sequence