Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2736

Experiment: Cobalt chloride 0.07 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2735 and Psest_2736 are separated by 179 nucleotidesPsest_2736 and Psest_2737 are separated by 141 nucleotides Psest_2735: Psest_2735 - hypothetical protein, at 2,925,977 to 2,926,651 _2735 Psest_2736: Psest_2736 - Transposase and inactivated derivatives, at 2,926,831 to 2,927,361 _2736 Psest_2737: Psest_2737 - Restriction endonuclease, at 2,927,503 to 2,928,399 _2737 Position (kb) 2926 2927 2928Strain fitness (log2 ratio) -2 -1 0 1 2at 2925.907 kb on + strandat 2925.931 kb on + strandat 2925.931 kb on + strandat 2925.932 kb on - strandat 2925.932 kb on - strandat 2925.932 kb on - strandat 2925.932 kb on - strandat 2925.932 kb on - strandat 2925.935 kb on + strandat 2925.935 kb on + strandat 2925.936 kb on - strandat 2925.936 kb on - strandat 2925.936 kb on - strandat 2925.936 kb on - strandat 2925.936 kb on - strandat 2925.954 kb on - strandat 2925.954 kb on - strandat 2926.047 kb on + strand, within Psest_2735at 2926.182 kb on + strand, within Psest_2735at 2926.182 kb on + strand, within Psest_2735at 2926.183 kb on - strand, within Psest_2735at 2926.183 kb on - strand, within Psest_2735at 2926.183 kb on - strand, within Psest_2735at 2926.189 kb on - strand, within Psest_2735at 2926.213 kb on + strand, within Psest_2735at 2926.214 kb on - strand, within Psest_2735at 2926.214 kb on - strand, within Psest_2735at 2926.217 kb on + strand, within Psest_2735at 2926.217 kb on + strand, within Psest_2735at 2926.218 kb on - strand, within Psest_2735at 2926.320 kb on - strand, within Psest_2735at 2926.320 kb on - strand, within Psest_2735at 2926.320 kb on - strand, within Psest_2735at 2926.320 kb on - strand, within Psest_2735at 2926.363 kb on + strand, within Psest_2735at 2926.363 kb on + strand, within Psest_2735at 2926.363 kb on + strand, within Psest_2735at 2926.363 kb on + strand, within Psest_2735at 2926.380 kb on - strand, within Psest_2735at 2926.380 kb on - strand, within Psest_2735at 2926.380 kb on - strand, within Psest_2735at 2926.380 kb on - strand, within Psest_2735at 2926.395 kb on - strand, within Psest_2735at 2926.395 kb on - strand, within Psest_2735at 2926.395 kb on - strand, within Psest_2735at 2926.395 kb on - strand, within Psest_2735at 2926.468 kb on + strand, within Psest_2735at 2926.478 kb on + strand, within Psest_2735at 2926.581 kb on + strand, within Psest_2735at 2926.582 kb on - strand, within Psest_2735at 2926.582 kb on - strand, within Psest_2735at 2926.646 kb on - strandat 2926.870 kb on + strandat 2926.870 kb on + strandat 2927.109 kb on - strand, within Psest_2736at 2927.213 kb on - strand, within Psest_2736at 2927.213 kb on - strand, within Psest_2736at 2927.213 kb on - strand, within Psest_2736at 2927.313 kb on + strandat 2927.393 kb on - strandat 2927.713 kb on + strand, within Psest_2737at 2927.714 kb on - strand, within Psest_2737at 2927.714 kb on - strand, within Psest_2737at 2927.714 kb on - strand, within Psest_2737at 2927.714 kb on - strand, within Psest_2737at 2927.735 kb on + strand, within Psest_2737at 2927.953 kb on + strand, within Psest_2737at 2927.954 kb on - strand, within Psest_2737at 2927.954 kb on - strand, within Psest_2737at 2927.954 kb on - strand, within Psest_2737at 2927.954 kb on - strand, within Psest_2737at 2927.957 kb on + strand, within Psest_2737at 2927.957 kb on + strand, within Psest_2737at 2927.957 kb on + strand, within Psest_2737at 2927.958 kb on - strand, within Psest_2737at 2927.958 kb on - strand, within Psest_2737at 2927.958 kb on - strand, within Psest_2737at 2927.958 kb on - strand, within Psest_2737at 2927.958 kb on - strand, within Psest_2737at 2928.002 kb on + strand, within Psest_2737at 2928.003 kb on - strand, within Psest_2737at 2928.003 kb on - strand, within Psest_2737at 2928.003 kb on - strand, within Psest_2737at 2928.024 kb on + strand, within Psest_2737at 2928.024 kb on + strand, within Psest_2737at 2928.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.07 mM
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2,925,907 + -1.4
2,925,931 + -0.7
2,925,931 + -0.3
2,925,932 - -0.7
2,925,932 - -0.8
2,925,932 - -1.2
2,925,932 - -1.7
2,925,932 - +0.3
2,925,935 + +0.6
2,925,935 + +0.1
2,925,936 - +0.6
2,925,936 - +1.2
2,925,936 - +0.3
2,925,936 - -1.3
2,925,936 - +0.1
2,925,954 - +1.5
2,925,954 - -0.0
2,926,047 + Psest_2735 0.10 +1.4
2,926,182 + Psest_2735 0.30 +1.1
2,926,182 + Psest_2735 0.30 +1.3
2,926,183 - Psest_2735 0.31 +0.9
2,926,183 - Psest_2735 0.31 -0.8
2,926,183 - Psest_2735 0.31 -0.5
2,926,189 - Psest_2735 0.31 -0.4
2,926,213 + Psest_2735 0.35 -0.7
2,926,214 - Psest_2735 0.35 +1.6
2,926,214 - Psest_2735 0.35 -0.0
2,926,217 + Psest_2735 0.36 -1.5
2,926,217 + Psest_2735 0.36 +0.7
2,926,218 - Psest_2735 0.36 +1.0
2,926,320 - Psest_2735 0.51 -0.3
2,926,320 - Psest_2735 0.51 +0.8
2,926,320 - Psest_2735 0.51 +0.5
2,926,320 - Psest_2735 0.51 -0.2
2,926,363 + Psest_2735 0.57 -0.0
2,926,363 + Psest_2735 0.57 +0.8
2,926,363 + Psest_2735 0.57 +1.0
2,926,363 + Psest_2735 0.57 -0.0
2,926,380 - Psest_2735 0.60 +0.6
2,926,380 - Psest_2735 0.60 -1.2
2,926,380 - Psest_2735 0.60 +2.2
2,926,380 - Psest_2735 0.60 -0.0
2,926,395 - Psest_2735 0.62 +0.8
2,926,395 - Psest_2735 0.62 +0.6
2,926,395 - Psest_2735 0.62 +0.5
2,926,395 - Psest_2735 0.62 -0.2
2,926,468 + Psest_2735 0.73 +0.2
2,926,478 + Psest_2735 0.74 -1.5
2,926,581 + Psest_2735 0.89 +1.0
2,926,582 - Psest_2735 0.90 -0.3
2,926,582 - Psest_2735 0.90 +2.0
2,926,646 - -0.2
2,926,870 + -1.0
2,926,870 + +1.6
2,927,109 - Psest_2736 0.52 -0.6
2,927,213 - Psest_2736 0.72 +1.3
2,927,213 - Psest_2736 0.72 -1.8
2,927,213 - Psest_2736 0.72 -1.4
2,927,313 + +0.3
2,927,393 - +0.1
2,927,713 + Psest_2737 0.23 -1.1
2,927,714 - Psest_2737 0.24 -0.3
2,927,714 - Psest_2737 0.24 -0.4
2,927,714 - Psest_2737 0.24 +0.0
2,927,714 - Psest_2737 0.24 -0.5
2,927,735 + Psest_2737 0.26 -1.0
2,927,953 + Psest_2737 0.50 -1.3
2,927,954 - Psest_2737 0.50 +0.3
2,927,954 - Psest_2737 0.50 +0.7
2,927,954 - Psest_2737 0.50 +1.5
2,927,954 - Psest_2737 0.50 -0.1
2,927,957 + Psest_2737 0.51 -0.6
2,927,957 + Psest_2737 0.51 +2.2
2,927,957 + Psest_2737 0.51 -0.3
2,927,958 - Psest_2737 0.51 +0.3
2,927,958 - Psest_2737 0.51 +1.3
2,927,958 - Psest_2737 0.51 +0.3
2,927,958 - Psest_2737 0.51 -0.5
2,927,958 - Psest_2737 0.51 -0.1
2,928,002 + Psest_2737 0.56 +0.2
2,928,003 - Psest_2737 0.56 -0.1
2,928,003 - Psest_2737 0.56 +0.6
2,928,003 - Psest_2737 0.56 +0.6
2,928,024 + Psest_2737 0.58 -1.2
2,928,024 + Psest_2737 0.58 +0.4
2,928,337 - -0.3

Or see this region's nucleotide sequence