Experiment: Cobalt chloride 0.07 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1777 and Psest_1778 are separated by 213 nucleotides Psest_1778 and Psest_1779 are separated by 17 nucleotides Psest_1779 and Psest_1780 are separated by 27 nucleotides Psest_1780 and Psest_1781 are separated by 2 nucleotides Psest_1781 and Psest_1782 are separated by 182 nucleotides Psest_1782 and Psest_1783 overlap by 4 nucleotides
Psest_1777: Psest_1777 - hypothetical protein, at 1,877,015 to 1,877,782
_1777
Psest_1778: Psest_1778 - tRNA_Glu_TTC, at 1,877,996 to 1,878,071
_1778
Psest_1779: Psest_1779 - tRNA_Gly_GCC, at 1,878,089 to 1,878,164
_1779
Psest_1780: Psest_1780 - hypothetical protein, at 1,878,192 to 1,878,371
_1780
Psest_1781: Psest_1781 - Uncharacterized protein conserved in bacteria, at 1,878,374 to 1,878,664
_1781
Psest_1782: Psest_1782 - Predicted transcriptional regulators, at 1,878,847 to 1,879,164
_1782
Psest_1783: Psest_1783 - Predicted transporter component, at 1,879,161 to 1,879,595
_1783
Position (kb)
1878
1879 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1877.172 kb on + strand, within Psest_1777 at 1877.172 kb on + strand, within Psest_1777 at 1877.173 kb on - strand, within Psest_1777 at 1877.283 kb on + strand, within Psest_1777 at 1877.459 kb on + strand, within Psest_1777 at 1877.459 kb on + strand, within Psest_1777 at 1877.460 kb on - strand, within Psest_1777 at 1877.460 kb on - strand, within Psest_1777 at 1877.718 kb on + strand at 1877.719 kb on - strand at 1877.753 kb on + strand at 1877.754 kb on - strand at 1877.770 kb on + strand at 1877.770 kb on + strand at 1877.770 kb on + strand at 1877.770 kb on + strand at 1877.770 kb on + strand at 1877.771 kb on - strand at 1877.771 kb on - strand at 1877.771 kb on - strand at 1877.771 kb on - strand at 1877.822 kb on + strand at 1877.822 kb on + strand at 1877.846 kb on - strand at 1877.890 kb on + strand at 1877.890 kb on + strand at 1877.891 kb on - strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1878.081 kb on + strand at 1878.081 kb on + strand at 1878.183 kb on + strand at 1878.381 kb on + strand at 1878.382 kb on - strand at 1878.382 kb on - strand at 1878.676 kb on + strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.729 kb on - strand at 1879.084 kb on + strand, within Psest_1782 at 1879.084 kb on + strand, within Psest_1782 at 1879.132 kb on + strand, within Psest_1782 at 1879.132 kb on + strand, within Psest_1782 at 1879.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.07 mM remove 1,877,172 + Psest_1777 0.20 +0.4 1,877,172 + Psest_1777 0.20 -0.4 1,877,173 - Psest_1777 0.21 +0.2 1,877,283 + Psest_1777 0.35 -1.0 1,877,459 + Psest_1777 0.58 +0.6 1,877,459 + Psest_1777 0.58 -2.4 1,877,460 - Psest_1777 0.58 +0.4 1,877,460 - Psest_1777 0.58 -3.7 1,877,718 + +0.5 1,877,719 - +1.0 1,877,753 + +1.0 1,877,754 - +2.6 1,877,770 + -0.9 1,877,770 + -0.9 1,877,770 + -0.4 1,877,770 + -1.6 1,877,770 + -1.9 1,877,771 - +0.7 1,877,771 - +0.5 1,877,771 - -1.2 1,877,771 - +1.6 1,877,822 + -1.9 1,877,822 + -0.4 1,877,846 - +1.7 1,877,890 + +0.1 1,877,890 + +1.2 1,877,891 - -1.7 1,877,918 + +0.6 1,877,918 + -0.4 1,877,918 + +1.4 1,877,918 + -1.6 1,878,081 + +0.4 1,878,081 + +0.3 1,878,183 + -1.4 1,878,381 + +1.6 1,878,382 - +0.8 1,878,382 - +0.6 1,878,676 + -1.2 1,878,677 - -1.2 1,878,677 - -1.7 1,878,677 - +0.1 1,878,677 - -2.3 1,878,677 - -0.3 1,878,677 - -0.3 1,878,729 - +0.8 1,879,084 + Psest_1782 0.75 -0.3 1,879,084 + Psest_1782 0.75 -0.8 1,879,132 + Psest_1782 0.90 -1.3 1,879,132 + Psest_1782 0.90 -1.3 1,879,133 - -0.4
Or see this region's nucleotide sequence