Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2577

Experiment: Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2575 and Psest_2576 are separated by 257 nucleotidesPsest_2576 and Psest_2577 are separated by 3 nucleotidesPsest_2577 and Psest_2578 are separated by 61 nucleotides Psest_2575: Psest_2575 - tRNA_Val_CAC, at 2,754,967 to 2,755,042 _2575 Psest_2576: Psest_2576 - hypothetical protein, at 2,755,300 to 2,755,944 _2576 Psest_2577: Psest_2577 - general secretion pathway protein D, at 2,755,948 to 2,757,882 _2577 Psest_2578: Psest_2578 - O-succinylhomoserine sulfhydrylase, at 2,757,944 to 2,759,155 _2578 Position (kb) 2755 2756 2757 2758Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2755.068 kb on - strandat 2755.068 kb on - strandat 2755.085 kb on - strandat 2755.223 kb on - strandat 2755.293 kb on - strandat 2755.327 kb on + strandat 2755.384 kb on + strand, within Psest_2576at 2755.384 kb on + strand, within Psest_2576at 2755.385 kb on - strand, within Psest_2576at 2755.385 kb on - strand, within Psest_2576at 2755.385 kb on - strand, within Psest_2576at 2755.385 kb on - strand, within Psest_2576at 2755.443 kb on + strand, within Psest_2576at 2755.444 kb on - strand, within Psest_2576at 2755.444 kb on - strand, within Psest_2576at 2755.448 kb on - strand, within Psest_2576at 2755.448 kb on - strand, within Psest_2576at 2755.448 kb on - strand, within Psest_2576at 2755.500 kb on - strand, within Psest_2576at 2755.690 kb on + strand, within Psest_2576at 2755.691 kb on - strand, within Psest_2576at 2755.723 kb on - strand, within Psest_2576at 2755.765 kb on + strand, within Psest_2576at 2755.765 kb on + strand, within Psest_2576at 2755.765 kb on + strand, within Psest_2576at 2755.765 kb on + strand, within Psest_2576at 2755.765 kb on + strand, within Psest_2576at 2755.766 kb on - strand, within Psest_2576at 2755.766 kb on - strand, within Psest_2576at 2755.766 kb on - strand, within Psest_2576at 2755.766 kb on - strand, within Psest_2576at 2755.766 kb on - strand, within Psest_2576at 2755.974 kb on - strandat 2755.990 kb on - strandat 2756.210 kb on + strand, within Psest_2577at 2756.210 kb on + strand, within Psest_2577at 2756.211 kb on - strand, within Psest_2577at 2756.212 kb on + strand, within Psest_2577at 2756.213 kb on - strand, within Psest_2577at 2756.481 kb on + strand, within Psest_2577at 2756.812 kb on - strand, within Psest_2577at 2756.853 kb on + strand, within Psest_2577at 2756.854 kb on - strand, within Psest_2577at 2756.854 kb on - strand, within Psest_2577at 2756.969 kb on + strand, within Psest_2577at 2756.970 kb on - strand, within Psest_2577at 2757.067 kb on - strand, within Psest_2577at 2757.334 kb on + strand, within Psest_2577at 2757.335 kb on - strand, within Psest_2577at 2757.335 kb on - strand, within Psest_2577at 2757.420 kb on + strand, within Psest_2577at 2757.420 kb on + strand, within Psest_2577at 2757.420 kb on + strand, within Psest_2577at 2757.420 kb on + strand, within Psest_2577at 2757.420 kb on + strand, within Psest_2577at 2757.420 kb on + strand, within Psest_2577at 2757.421 kb on + strand, within Psest_2577at 2757.421 kb on - strand, within Psest_2577at 2757.421 kb on - strand, within Psest_2577at 2757.544 kb on - strand, within Psest_2577at 2757.763 kb on + strandat 2757.763 kb on + strandat 2757.763 kb on + strandat 2757.764 kb on - strandat 2757.773 kb on + strandat 2757.774 kb on - strandat 2757.774 kb on - strandat 2757.872 kb on + strandat 2757.872 kb on + strandat 2757.873 kb on - strandat 2757.873 kb on - strandat 2758.094 kb on - strand, within Psest_2578at 2758.266 kb on + strand, within Psest_2578at 2758.267 kb on - strand, within Psest_2578at 2758.267 kb on - strand, within Psest_2578at 2758.269 kb on + strand, within Psest_2578at 2758.343 kb on - strand, within Psest_2578at 2758.497 kb on + strand, within Psest_2578at 2758.497 kb on + strand, within Psest_2578at 2758.497 kb on + strand, within Psest_2578at 2758.498 kb on - strand, within Psest_2578at 2758.498 kb on - strand, within Psest_2578at 2758.498 kb on - strand, within Psest_2578at 2758.498 kb on - strand, within Psest_2578at 2758.574 kb on - strand, within Psest_2578at 2758.681 kb on + strand, within Psest_2578at 2758.682 kb on - strand, within Psest_2578at 2758.682 kb on - strand, within Psest_2578at 2758.762 kb on - strand, within Psest_2578at 2758.762 kb on - strand, within Psest_2578at 2758.762 kb on - strand, within Psest_2578at 2758.812 kb on - strand, within Psest_2578

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.05 mM
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2,755,068 - -1.9
2,755,068 - -0.5
2,755,085 - -0.0
2,755,223 - -1.2
2,755,293 - -0.7
2,755,327 + -0.6
2,755,384 + Psest_2576 0.13 +0.9
2,755,384 + Psest_2576 0.13 +0.3
2,755,385 - Psest_2576 0.13 +2.1
2,755,385 - Psest_2576 0.13 +0.1
2,755,385 - Psest_2576 0.13 -0.3
2,755,385 - Psest_2576 0.13 +0.3
2,755,443 + Psest_2576 0.22 -0.0
2,755,444 - Psest_2576 0.22 +2.2
2,755,444 - Psest_2576 0.22 +0.7
2,755,448 - Psest_2576 0.23 -0.4
2,755,448 - Psest_2576 0.23 -2.8
2,755,448 - Psest_2576 0.23 -0.1
2,755,500 - Psest_2576 0.31 +0.6
2,755,690 + Psest_2576 0.60 -1.5
2,755,691 - Psest_2576 0.61 -2.5
2,755,723 - Psest_2576 0.66 -1.5
2,755,765 + Psest_2576 0.72 -0.5
2,755,765 + Psest_2576 0.72 +1.2
2,755,765 + Psest_2576 0.72 +0.8
2,755,765 + Psest_2576 0.72 -0.9
2,755,765 + Psest_2576 0.72 -2.0
2,755,766 - Psest_2576 0.72 -1.3
2,755,766 - Psest_2576 0.72 +0.2
2,755,766 - Psest_2576 0.72 +0.8
2,755,766 - Psest_2576 0.72 +0.2
2,755,766 - Psest_2576 0.72 +0.8
2,755,974 - +1.4
2,755,990 - +0.6
2,756,210 + Psest_2577 0.14 -0.6
2,756,210 + Psest_2577 0.14 -0.7
2,756,211 - Psest_2577 0.14 -1.7
2,756,212 + Psest_2577 0.14 -0.2
2,756,213 - Psest_2577 0.14 -1.6
2,756,481 + Psest_2577 0.28 -0.4
2,756,812 - Psest_2577 0.45 -1.5
2,756,853 + Psest_2577 0.47 -1.7
2,756,854 - Psest_2577 0.47 -1.9
2,756,854 - Psest_2577 0.47 -1.2
2,756,969 + Psest_2577 0.53 -0.9
2,756,970 - Psest_2577 0.53 -0.1
2,757,067 - Psest_2577 0.58 +0.1
2,757,334 + Psest_2577 0.72 -0.2
2,757,335 - Psest_2577 0.72 -1.4
2,757,335 - Psest_2577 0.72 -0.3
2,757,420 + Psest_2577 0.76 -0.7
2,757,420 + Psest_2577 0.76 -2.1
2,757,420 + Psest_2577 0.76 -2.3
2,757,420 + Psest_2577 0.76 -0.9
2,757,420 + Psest_2577 0.76 +0.2
2,757,420 + Psest_2577 0.76 +0.9
2,757,421 + Psest_2577 0.76 -0.5
2,757,421 - Psest_2577 0.76 -2.0
2,757,421 - Psest_2577 0.76 -0.4
2,757,544 - Psest_2577 0.82 -1.0
2,757,763 + +0.1
2,757,763 + +1.6
2,757,763 + -0.0
2,757,764 - +1.5
2,757,773 + +2.9
2,757,774 - +1.1
2,757,774 - +0.1
2,757,872 + -1.1
2,757,872 + +1.2
2,757,873 - -0.1
2,757,873 - -0.7
2,758,094 - Psest_2578 0.12 +0.1
2,758,266 + Psest_2578 0.27 +0.2
2,758,267 - Psest_2578 0.27 +0.8
2,758,267 - Psest_2578 0.27 +1.0
2,758,269 + Psest_2578 0.27 -1.0
2,758,343 - Psest_2578 0.33 -1.7
2,758,497 + Psest_2578 0.46 +1.0
2,758,497 + Psest_2578 0.46 +0.2
2,758,497 + Psest_2578 0.46 +0.1
2,758,498 - Psest_2578 0.46 +1.1
2,758,498 - Psest_2578 0.46 -1.1
2,758,498 - Psest_2578 0.46 -0.9
2,758,498 - Psest_2578 0.46 +0.3
2,758,574 - Psest_2578 0.52 -0.6
2,758,681 + Psest_2578 0.61 +1.0
2,758,682 - Psest_2578 0.61 +0.2
2,758,682 - Psest_2578 0.61 +0.2
2,758,762 - Psest_2578 0.67 -0.2
2,758,762 - Psest_2578 0.67 +1.2
2,758,762 - Psest_2578 0.67 +0.4
2,758,812 - Psest_2578 0.72 +2.2

Or see this region's nucleotide sequence