Experiment: Cobalt chloride 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0179 and Psest_0180 are separated by 120 nucleotides Psest_0180 and Psest_0181 are separated by 212 nucleotides
Psest_0179: Psest_0179 - ABC-type Fe3+ transport system, periplasmic component, at 172,412 to 173,413
_0179
Psest_0180: Psest_0180 - ABC-type Fe3+ transport system, permease component, at 173,534 to 175,150
_0180
Psest_0181: Psest_0181 - glycine cleavage system T protein, at 175,363 to 176,445
_0181
Position (kb) 173
174
175
176 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 173.479 kb on + strand at 175.266 kb on - strand at 175.313 kb on + strand at 175.374 kb on + strand at 175.374 kb on + strand at 175.375 kb on - strand at 175.384 kb on + strand at 175.463 kb on + strand at 175.463 kb on + strand at 175.463 kb on + strand at 175.463 kb on + strand at 175.464 kb on - strand at 175.555 kb on + strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.556 kb on - strand, within Psest_0181 at 175.615 kb on + strand, within Psest_0181 at 175.615 kb on + strand, within Psest_0181 at 175.615 kb on + strand, within Psest_0181 at 175.667 kb on - strand, within Psest_0181 at 175.667 kb on - strand, within Psest_0181 at 175.924 kb on + strand, within Psest_0181
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.05 mM remove 173,479 + +0.9 175,266 - -0.6 175,313 + -0.6 175,374 + +1.8 175,374 + +0.3 175,375 - +1.2 175,384 + +1.6 175,463 + +0.7 175,463 + +0.8 175,463 + -2.3 175,463 + -1.5 175,464 - -0.9 175,555 + Psest_0181 0.18 -0.5 175,556 - Psest_0181 0.18 +0.8 175,556 - Psest_0181 0.18 -0.5 175,556 - Psest_0181 0.18 -1.4 175,556 - Psest_0181 0.18 +1.5 175,615 + Psest_0181 0.23 -1.1 175,615 + Psest_0181 0.23 +3.3 175,615 + Psest_0181 0.23 +0.7 175,667 - Psest_0181 0.28 +0.7 175,667 - Psest_0181 0.28 -0.5 175,924 + Psest_0181 0.52 -1.7
Or see this region's nucleotide sequence