Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1561

Experiment: Cobalt chloride 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1559 and Psest_1560 are separated by 64 nucleotidesPsest_1560 and Psest_1561 are separated by 11 nucleotidesPsest_1561 and Psest_1562 are separated by 73 nucleotidesPsest_1562 and Psest_1563 are separated by 63 nucleotides Psest_1559: Psest_1559 - universal bacterial protein YeaZ, at 1,660,389 to 1,661,066 _1559 Psest_1560: Psest_1560 - hypothetical protein, at 1,661,131 to 1,661,475 _1560 Psest_1561: Psest_1561 - Uncharacterized conserved protein, at 1,661,487 to 1,662,347 _1561 Psest_1562: Psest_1562 - Uncharacterized protein conserved in bacteria, at 1,662,421 to 1,663,113 _1562 Psest_1563: Psest_1563 - Protein of unknown function (DUF548)., at 1,663,177 to 1,663,953 _1563 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1661.100 kb on - strandat 1661.206 kb on + strand, within Psest_1560at 1661.206 kb on + strand, within Psest_1560at 1661.269 kb on + strand, within Psest_1560at 1661.270 kb on - strand, within Psest_1560at 1661.270 kb on - strand, within Psest_1560at 1661.404 kb on + strand, within Psest_1560at 1661.404 kb on + strand, within Psest_1560at 1661.404 kb on + strand, within Psest_1560at 1661.404 kb on + strand, within Psest_1560at 1661.405 kb on - strand, within Psest_1560at 1661.467 kb on + strandat 1661.468 kb on - strandat 1661.502 kb on + strandat 1661.502 kb on + strandat 1661.506 kb on - strandat 1661.592 kb on + strand, within Psest_1561at 1661.592 kb on + strand, within Psest_1561at 1661.592 kb on + strand, within Psest_1561at 1661.592 kb on + strand, within Psest_1561at 1661.592 kb on + strand, within Psest_1561at 1661.592 kb on + strand, within Psest_1561at 1661.592 kb on + strand, within Psest_1561at 1661.592 kb on + strand, within Psest_1561at 1661.592 kb on + strand, within Psest_1561at 1661.592 kb on + strand, within Psest_1561at 1661.592 kb on + strand, within Psest_1561at 1661.593 kb on - strand, within Psest_1561at 1661.634 kb on + strand, within Psest_1561at 1661.634 kb on + strand, within Psest_1561at 1661.634 kb on + strand, within Psest_1561at 1661.634 kb on + strand, within Psest_1561at 1661.634 kb on + strand, within Psest_1561at 1661.634 kb on + strand, within Psest_1561at 1661.634 kb on + strand, within Psest_1561at 1661.635 kb on - strand, within Psest_1561at 1661.635 kb on - strand, within Psest_1561at 1661.871 kb on - strand, within Psest_1561at 1662.210 kb on + strand, within Psest_1561at 1662.219 kb on - strand, within Psest_1561at 1662.376 kb on - strandat 1662.438 kb on - strandat 1662.760 kb on + strand, within Psest_1562at 1662.876 kb on + strand, within Psest_1562at 1663.051 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.05 mM
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1,661,100 - +0.8
1,661,206 + Psest_1560 0.22 -0.0
1,661,206 + Psest_1560 0.22 -1.2
1,661,269 + Psest_1560 0.40 -3.0
1,661,270 - Psest_1560 0.40 -0.3
1,661,270 - Psest_1560 0.40 +1.9
1,661,404 + Psest_1560 0.79 -0.4
1,661,404 + Psest_1560 0.79 -1.4
1,661,404 + Psest_1560 0.79 -0.8
1,661,404 + Psest_1560 0.79 +0.1
1,661,405 - Psest_1560 0.79 -1.1
1,661,467 + +0.4
1,661,468 - -1.0
1,661,502 + -1.3
1,661,502 + +1.6
1,661,506 - -0.7
1,661,592 + Psest_1561 0.12 +0.2
1,661,592 + Psest_1561 0.12 -1.0
1,661,592 + Psest_1561 0.12 -1.3
1,661,592 + Psest_1561 0.12 +0.4
1,661,592 + Psest_1561 0.12 -0.2
1,661,592 + Psest_1561 0.12 -0.0
1,661,592 + Psest_1561 0.12 -0.0
1,661,592 + Psest_1561 0.12 +1.6
1,661,592 + Psest_1561 0.12 +1.6
1,661,592 + Psest_1561 0.12 +0.3
1,661,592 + Psest_1561 0.12 -0.6
1,661,593 - Psest_1561 0.12 -2.7
1,661,634 + Psest_1561 0.17 +1.2
1,661,634 + Psest_1561 0.17 -0.8
1,661,634 + Psest_1561 0.17 +1.5
1,661,634 + Psest_1561 0.17 -0.8
1,661,634 + Psest_1561 0.17 -0.1
1,661,634 + Psest_1561 0.17 +0.8
1,661,634 + Psest_1561 0.17 -1.7
1,661,635 - Psest_1561 0.17 +0.0
1,661,635 - Psest_1561 0.17 +0.2
1,661,871 - Psest_1561 0.45 -1.5
1,662,210 + Psest_1561 0.84 +0.6
1,662,219 - Psest_1561 0.85 +0.1
1,662,376 - -0.5
1,662,438 - +0.5
1,662,760 + Psest_1562 0.49 +0.5
1,662,876 + Psest_1562 0.66 +1.1
1,663,051 + +0.1

Or see this region's nucleotide sequence