Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19965

Experiment: RCH2_defined_1percent_glucose with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19960 and BWI76_RS19965 are separated by 271 nucleotidesBWI76_RS19965 and BWI76_RS19970 overlap by 11 nucleotides BWI76_RS19960: BWI76_RS19960 - MFS transporter, at 4,180,111 to 4,181,457 _RS19960 BWI76_RS19965: BWI76_RS19965 - sn-glycerol-3-phosphate dehydrogenase subunit A, at 4,181,729 to 4,183,351 _RS19965 BWI76_RS19970: BWI76_RS19970 - anaerobic glycerol-3-phosphate dehydrogenase subunit B, at 4,183,341 to 4,184,600 _RS19970 Position (kb) 4181 4182 4183 4184Strain fitness (log2 ratio) -2 -1 0 1at 4180.880 kb on + strand, within BWI76_RS19960at 4180.972 kb on + strand, within BWI76_RS19960at 4180.980 kb on - strand, within BWI76_RS19960at 4181.202 kb on - strand, within BWI76_RS19960at 4181.202 kb on - strand, within BWI76_RS19960at 4181.531 kb on - strandat 4181.533 kb on + strandat 4181.979 kb on - strand, within BWI76_RS19965at 4182.000 kb on + strand, within BWI76_RS19965at 4182.000 kb on + strand, within BWI76_RS19965at 4182.133 kb on + strand, within BWI76_RS19965at 4182.133 kb on + strand, within BWI76_RS19965at 4182.391 kb on - strand, within BWI76_RS19965at 4183.052 kb on + strand, within BWI76_RS19965at 4183.305 kb on + strandat 4183.393 kb on + strandat 4183.402 kb on - strandat 4183.647 kb on - strand, within BWI76_RS19970at 4183.655 kb on + strand, within BWI76_RS19970at 4184.257 kb on + strand, within BWI76_RS19970

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 100 mM
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4,180,880 + BWI76_RS19960 0.57 -0.1
4,180,972 + BWI76_RS19960 0.64 +0.4
4,180,980 - BWI76_RS19960 0.65 +0.4
4,181,202 - BWI76_RS19960 0.81 -0.4
4,181,202 - BWI76_RS19960 0.81 -0.6
4,181,531 - +0.1
4,181,533 + -1.2
4,181,979 - BWI76_RS19965 0.15 +1.2
4,182,000 + BWI76_RS19965 0.17 +0.7
4,182,000 + BWI76_RS19965 0.17 +0.3
4,182,133 + BWI76_RS19965 0.25 +0.3
4,182,133 + BWI76_RS19965 0.25 +0.4
4,182,391 - BWI76_RS19965 0.41 +0.1
4,183,052 + BWI76_RS19965 0.82 +0.9
4,183,305 + -0.3
4,183,393 + -0.0
4,183,402 - -2.3
4,183,647 - BWI76_RS19970 0.24 -0.4
4,183,655 + BWI76_RS19970 0.25 +0.2
4,184,257 + BWI76_RS19970 0.73 +0.4

Or see this region's nucleotide sequence