Experiment: RCH2_defined_1percent_glucose with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16410 and BWI76_RS16415 are separated by 57 nucleotides BWI76_RS16415 and BWI76_RS16420 are separated by 92 nucleotides BWI76_RS16420 and BWI76_RS16425 are separated by 270 nucleotides BWI76_RS16425 and BWI76_RS16430 are separated by 225 nucleotides
BWI76_RS16410: BWI76_RS16410 - pyridoxamine 5'-phosphate oxidase, at 3,405,151 to 3,405,807
_RS16410
BWI76_RS16415: BWI76_RS16415 - lysozyme inhibitor, at 3,405,865 to 3,406,188
_RS16415
BWI76_RS16420: BWI76_RS16420 - anhydro-N-acetylmuramic acid kinase, at 3,406,281 to 3,407,405
_RS16420
BWI76_RS16425: BWI76_RS16425 - hypothetical protein, at 3,407,676 to 3,408,143
_RS16425
BWI76_RS16430: BWI76_RS16430 - GGDEF domain-containing protein, at 3,408,369 to 3,409,721
_RS16430
Position (kb)
3406
3407
3408 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3406.229 kb on - strand at 3406.593 kb on + strand, within BWI76_RS16420 at 3406.913 kb on - strand, within BWI76_RS16420 at 3407.246 kb on - strand, within BWI76_RS16420 at 3407.285 kb on + strand, within BWI76_RS16420 at 3407.303 kb on - strand at 3407.312 kb on - strand at 3407.398 kb on + strand at 3407.435 kb on + strand at 3407.475 kb on - strand at 3407.510 kb on + strand at 3407.510 kb on + strand at 3407.528 kb on - strand at 3407.553 kb on - strand at 3407.581 kb on + strand at 3407.672 kb on - strand at 3407.705 kb on - strand at 3407.732 kb on - strand, within BWI76_RS16425 at 3407.819 kb on - strand, within BWI76_RS16425 at 3407.976 kb on + strand at 3408.030 kb on + strand, within BWI76_RS16425 at 3408.121 kb on + strand at 3408.122 kb on + strand at 3408.130 kb on - strand at 3408.138 kb on + strand at 3408.138 kb on + strand at 3408.138 kb on + strand at 3408.138 kb on + strand at 3408.138 kb on + strand at 3408.144 kb on + strand at 3408.144 kb on + strand at 3408.145 kb on + strand at 3408.145 kb on + strand at 3408.145 kb on + strand at 3408.145 kb on + strand at 3408.145 kb on + strand at 3408.145 kb on + strand at 3408.145 kb on + strand at 3408.146 kb on - strand at 3408.146 kb on - strand at 3408.152 kb on - strand at 3408.153 kb on - strand at 3408.158 kb on + strand at 3408.158 kb on + strand at 3408.158 kb on + strand at 3408.252 kb on - strand at 3408.254 kb on - strand at 3408.254 kb on - strand at 3408.331 kb on - strand at 3408.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 100 mM remove 3,406,229 - +1.9 3,406,593 + BWI76_RS16420 0.28 +0.4 3,406,913 - BWI76_RS16420 0.56 +0.4 3,407,246 - BWI76_RS16420 0.86 +1.1 3,407,285 + BWI76_RS16420 0.89 +1.7 3,407,303 - +1.0 3,407,312 - +0.1 3,407,398 + +0.4 3,407,435 + -0.3 3,407,475 - +0.1 3,407,510 + +0.5 3,407,510 + +0.4 3,407,528 - +0.2 3,407,553 - -0.0 3,407,581 + -0.0 3,407,672 - -0.1 3,407,705 - -1.1 3,407,732 - BWI76_RS16425 0.12 +1.4 3,407,819 - BWI76_RS16425 0.31 -0.0 3,407,976 + -0.3 3,408,030 + BWI76_RS16425 0.76 -0.3 3,408,121 + +0.1 3,408,122 + -0.1 3,408,130 - -1.2 3,408,138 + -0.6 3,408,138 + +0.4 3,408,138 + -0.0 3,408,138 + -0.8 3,408,138 + +1.2 3,408,144 + +0.4 3,408,144 + +0.0 3,408,145 + -1.1 3,408,145 + +0.4 3,408,145 + +0.0 3,408,145 + -0.3 3,408,145 + +0.5 3,408,145 + -0.4 3,408,145 + +0.7 3,408,146 - -1.3 3,408,146 - +0.6 3,408,152 - +0.4 3,408,153 - +3.7 3,408,158 + -0.6 3,408,158 + +0.4 3,408,158 + -0.5 3,408,252 - -0.3 3,408,254 - +0.6 3,408,254 - -0.1 3,408,331 - -0.6 3,408,367 - +3.0
Or see this region's nucleotide sequence