Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13410

Experiment: RCH2_defined_1percent_glucose with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13405 and BWI76_RS13410 are separated by 19 nucleotidesBWI76_RS13410 and BWI76_RS13415 are separated by 1 nucleotidesBWI76_RS13415 and BWI76_RS13420 overlap by 11 nucleotides BWI76_RS13405: BWI76_RS13405 - spermidine/putrescine ABC transporter substrate-binding protein, at 2,796,103 to 2,797,248 _RS13405 BWI76_RS13410: BWI76_RS13410 - polyamine ABC transporter ATP-binding protein, at 2,797,268 to 2,798,278 _RS13410 BWI76_RS13415: BWI76_RS13415 - spermidine/putrescine ABC transporter permease, at 2,798,280 to 2,799,209 _RS13415 BWI76_RS13420: BWI76_RS13420 - ABC transporter permease, at 2,799,199 to 2,800,005 _RS13420 Position (kb) 2797 2798 2799Strain fitness (log2 ratio) -1 0 1at 2796.362 kb on + strand, within BWI76_RS13405at 2796.370 kb on - strand, within BWI76_RS13405at 2796.510 kb on + strand, within BWI76_RS13405at 2796.946 kb on + strand, within BWI76_RS13405at 2796.985 kb on + strand, within BWI76_RS13405at 2797.092 kb on + strand, within BWI76_RS13405at 2797.769 kb on - strand, within BWI76_RS13410at 2797.780 kb on + strand, within BWI76_RS13410at 2797.839 kb on + strand, within BWI76_RS13410at 2798.327 kb on + strandat 2798.475 kb on - strand, within BWI76_RS13415at 2798.596 kb on + strand, within BWI76_RS13415at 2798.604 kb on - strand, within BWI76_RS13415at 2798.693 kb on - strand, within BWI76_RS13415at 2799.088 kb on + strand, within BWI76_RS13415

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 100 mM
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2,796,362 + BWI76_RS13405 0.23 +0.4
2,796,370 - BWI76_RS13405 0.23 -0.6
2,796,510 + BWI76_RS13405 0.36 -0.7
2,796,946 + BWI76_RS13405 0.74 +0.1
2,796,985 + BWI76_RS13405 0.77 +0.3
2,797,092 + BWI76_RS13405 0.86 +0.4
2,797,769 - BWI76_RS13410 0.50 +0.1
2,797,780 + BWI76_RS13410 0.51 +1.4
2,797,839 + BWI76_RS13410 0.56 +0.3
2,798,327 + -0.2
2,798,475 - BWI76_RS13415 0.21 -0.5
2,798,596 + BWI76_RS13415 0.34 -0.0
2,798,604 - BWI76_RS13415 0.35 -0.5
2,798,693 - BWI76_RS13415 0.44 +0.4
2,799,088 + BWI76_RS13415 0.87 -1.4

Or see this region's nucleotide sequence