Experiment: RCH2_defined_1percent_glucose with Chloride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03800 and BWI76_RS03805 overlap by 1 nucleotides BWI76_RS03805 and BWI76_RS03810 are separated by 349 nucleotides BWI76_RS03810 and BWI76_RS03815 are separated by 11 nucleotides BWI76_RS03815 and BWI76_RS03820 are separated by 109 nucleotides
BWI76_RS03800: BWI76_RS03800 - hypothetical protein, at 786,417 to 786,737
_RS03800
BWI76_RS03805: BWI76_RS03805 - porin, at 786,737 to 787,282
_RS03805
BWI76_RS03810: BWI76_RS03810 - GTPase, at 787,632 to 788,588
_RS03810
BWI76_RS03815: BWI76_RS03815 - hypothetical protein, at 788,600 to 788,803
_RS03815
BWI76_RS03820: BWI76_RS03820 - carbon starvation protein A, at 788,913 to 791,063
_RS03820
Position (kb) 787
788
789 Strain fitness (log2 ratio) -1
0
1
2 at 786.768 kb on - strand at 786.905 kb on + strand, within BWI76_RS03805 at 786.924 kb on + strand, within BWI76_RS03805 at 786.936 kb on + strand, within BWI76_RS03805 at 786.937 kb on - strand, within BWI76_RS03805 at 787.215 kb on + strand, within BWI76_RS03805 at 787.244 kb on + strand at 787.252 kb on - strand at 787.259 kb on - strand at 787.292 kb on - strand at 787.369 kb on - strand at 787.437 kb on - strand at 787.738 kb on - strand, within BWI76_RS03810 at 787.850 kb on + strand, within BWI76_RS03810 at 788.073 kb on - strand, within BWI76_RS03810 at 788.075 kb on - strand, within BWI76_RS03810 at 788.199 kb on + strand, within BWI76_RS03810 at 788.286 kb on - strand, within BWI76_RS03810 at 788.320 kb on - strand, within BWI76_RS03810 at 788.365 kb on + strand, within BWI76_RS03810 at 788.413 kb on + strand, within BWI76_RS03810 at 788.421 kb on - strand, within BWI76_RS03810 at 788.423 kb on + strand, within BWI76_RS03810 at 788.524 kb on - strand at 788.590 kb on - strand at 788.697 kb on + strand, within BWI76_RS03815 at 788.707 kb on + strand, within BWI76_RS03815 at 788.831 kb on + strand at 788.844 kb on + strand at 788.852 kb on - strand at 788.891 kb on - strand at 788.992 kb on - strand at 789.068 kb on - strand at 789.076 kb on + strand at 789.199 kb on + strand, within BWI76_RS03820 at 789.207 kb on - strand, within BWI76_RS03820 at 789.207 kb on - strand, within BWI76_RS03820 at 789.207 kb on - strand, within BWI76_RS03820 at 789.240 kb on - strand, within BWI76_RS03820 at 789.302 kb on + strand, within BWI76_RS03820 at 789.310 kb on - strand, within BWI76_RS03820 at 789.310 kb on - strand, within BWI76_RS03820 at 789.310 kb on - strand, within BWI76_RS03820 at 789.518 kb on + strand, within BWI76_RS03820
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 100 mM remove 786,768 - +0.2 786,905 + BWI76_RS03805 0.31 +0.2 786,924 + BWI76_RS03805 0.34 +0.0 786,936 + BWI76_RS03805 0.36 +0.1 786,937 - BWI76_RS03805 0.37 +0.1 787,215 + BWI76_RS03805 0.88 +0.8 787,244 + -0.3 787,252 - -0.4 787,259 - +0.4 787,292 - +0.4 787,369 - +0.5 787,437 - +0.4 787,738 - BWI76_RS03810 0.11 -1.0 787,850 + BWI76_RS03810 0.23 +1.9 788,073 - BWI76_RS03810 0.46 +0.5 788,075 - BWI76_RS03810 0.46 +0.3 788,199 + BWI76_RS03810 0.59 +0.9 788,286 - BWI76_RS03810 0.68 +0.5 788,320 - BWI76_RS03810 0.72 +0.3 788,365 + BWI76_RS03810 0.77 +0.8 788,413 + BWI76_RS03810 0.82 +0.2 788,421 - BWI76_RS03810 0.82 +0.0 788,423 + BWI76_RS03810 0.83 +1.5 788,524 - +0.7 788,590 - +0.3 788,697 + BWI76_RS03815 0.48 +0.3 788,707 + BWI76_RS03815 0.52 -0.3 788,831 + +0.1 788,844 + -1.1 788,852 - +1.1 788,891 - +1.1 788,992 - +0.5 789,068 - +0.7 789,076 + +0.4 789,199 + BWI76_RS03820 0.13 +0.4 789,207 - BWI76_RS03820 0.14 -0.3 789,207 - BWI76_RS03820 0.14 +0.1 789,207 - BWI76_RS03820 0.14 -0.8 789,240 - BWI76_RS03820 0.15 -1.0 789,302 + BWI76_RS03820 0.18 -0.2 789,310 - BWI76_RS03820 0.18 +0.1 789,310 - BWI76_RS03820 0.18 -0.7 789,310 - BWI76_RS03820 0.18 +0.2 789,518 + BWI76_RS03820 0.28 -0.2
Or see this region's nucleotide sequence