Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0843

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0840 and Psest_0841 are separated by 74 nucleotidesPsest_0841 and Psest_0842 overlap by 4 nucleotidesPsest_0842 and Psest_0843 are separated by 49 nucleotidesPsest_0843 and Psest_0844 overlap by 4 nucleotidesPsest_0844 and Psest_0845 are separated by 16 nucleotides Psest_0840: Psest_0840 - anaerobic ribonucleoside-triphosphate reductase, at 910,238 to 912,256 _0840 Psest_0841: Psest_0841 - hypothetical protein, at 912,331 to 912,486 _0841 Psest_0842: Psest_0842 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 912,483 to 913,178 _0842 Psest_0843: Psest_0843 - hypothetical protein, at 913,228 to 914,604 _0843 Psest_0844: Psest_0844 - High-affinity Fe2+/Pb2+ permease, at 914,601 to 915,458 _0844 Psest_0845: Psest_0845 - hypothetical protein, at 915,475 to 915,813 _0845 Position (kb) 913 914 915Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 912.301 kb on + strandat 912.301 kb on + strandat 912.301 kb on + strandat 912.302 kb on - strandat 912.302 kb on - strandat 912.306 kb on - strandat 912.591 kb on + strand, within Psest_0842at 912.768 kb on + strand, within Psest_0842at 913.176 kb on + strandat 913.342 kb on + strandat 913.343 kb on - strandat 913.343 kb on - strandat 913.343 kb on - strandat 913.359 kb on - strandat 913.522 kb on + strand, within Psest_0843at 913.522 kb on + strand, within Psest_0843at 913.522 kb on + strand, within Psest_0843at 913.522 kb on + strand, within Psest_0843at 913.522 kb on + strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.523 kb on - strand, within Psest_0843at 913.608 kb on + strand, within Psest_0843at 913.608 kb on + strand, within Psest_0843at 913.609 kb on - strand, within Psest_0843at 913.609 kb on - strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.610 kb on + strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.611 kb on - strand, within Psest_0843at 913.897 kb on + strand, within Psest_0843at 913.898 kb on - strand, within Psest_0843at 914.048 kb on + strand, within Psest_0843at 914.048 kb on + strand, within Psest_0843at 914.049 kb on - strand, within Psest_0843at 914.049 kb on - strand, within Psest_0843at 914.049 kb on - strand, within Psest_0843at 914.049 kb on - strand, within Psest_0843at 914.049 kb on - strand, within Psest_0843at 914.201 kb on + strand, within Psest_0843at 914.201 kb on + strand, within Psest_0843at 914.201 kb on + strand, within Psest_0843at 914.201 kb on + strand, within Psest_0843at 914.202 kb on - strand, within Psest_0843at 914.202 kb on - strand, within Psest_0843at 914.202 kb on - strand, within Psest_0843at 914.207 kb on + strand, within Psest_0843at 914.207 kb on + strand, within Psest_0843at 914.207 kb on + strand, within Psest_0843at 914.207 kb on + strand, within Psest_0843at 914.207 kb on + strand, within Psest_0843at 914.208 kb on - strand, within Psest_0843at 914.229 kb on - strand, within Psest_0843at 914.507 kb on + strandat 914.508 kb on - strandat 914.508 kb on - strandat 914.508 kb on - strandat 914.508 kb on - strandat 914.508 kb on - strandat 914.803 kb on + strand, within Psest_0844at 914.803 kb on + strand, within Psest_0844at 914.803 kb on + strand, within Psest_0844at 914.803 kb on + strand, within Psest_0844at 914.817 kb on + strand, within Psest_0844at 914.818 kb on - strand, within Psest_0844at 915.046 kb on + strand, within Psest_0844at 915.047 kb on - strand, within Psest_0844at 915.223 kb on - strand, within Psest_0844at 915.288 kb on + strand, within Psest_0844at 915.473 kb on + strandat 915.474 kb on - strandat 915.474 kb on - strandat 915.476 kb on + strandat 915.476 kb on + strandat 915.476 kb on + strandat 915.476 kb on + strandat 915.477 kb on - strandat 915.477 kb on - strandat 915.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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912,301 + +1.2
912,301 + -0.3
912,301 + +1.1
912,302 - -0.8
912,302 - +1.3
912,306 - +0.5
912,591 + Psest_0842 0.16 -1.4
912,768 + Psest_0842 0.41 -0.1
913,176 + +0.8
913,342 + -1.1
913,343 - +0.5
913,343 - -0.7
913,343 - -1.1
913,359 - -1.0
913,522 + Psest_0843 0.21 -4.1
913,522 + Psest_0843 0.21 +0.9
913,522 + Psest_0843 0.21 -4.4
913,522 + Psest_0843 0.21 -1.7
913,522 + Psest_0843 0.21 -0.9
913,523 - Psest_0843 0.21 +0.4
913,523 - Psest_0843 0.21 -2.8
913,523 - Psest_0843 0.21 -2.0
913,523 - Psest_0843 0.21 -0.2
913,523 - Psest_0843 0.21 -1.4
913,523 - Psest_0843 0.21 -0.7
913,523 - Psest_0843 0.21 -2.2
913,608 + Psest_0843 0.28 -1.5
913,608 + Psest_0843 0.28 -1.3
913,609 - Psest_0843 0.28 -0.4
913,609 - Psest_0843 0.28 -1.1
913,610 + Psest_0843 0.28 -2.7
913,610 + Psest_0843 0.28 -2.6
913,610 + Psest_0843 0.28 -2.9
913,610 + Psest_0843 0.28 -2.0
913,610 + Psest_0843 0.28 -2.2
913,610 + Psest_0843 0.28 -0.7
913,610 + Psest_0843 0.28 -0.1
913,610 + Psest_0843 0.28 -0.1
913,610 + Psest_0843 0.28 -2.3
913,611 - Psest_0843 0.28 -1.1
913,611 - Psest_0843 0.28 -1.0
913,611 - Psest_0843 0.28 -0.9
913,611 - Psest_0843 0.28 -2.3
913,611 - Psest_0843 0.28 -0.2
913,611 - Psest_0843 0.28 -2.7
913,611 - Psest_0843 0.28 -2.3
913,611 - Psest_0843 0.28 -2.1
913,611 - Psest_0843 0.28 -1.8
913,897 + Psest_0843 0.49 -1.7
913,898 - Psest_0843 0.49 -2.5
914,048 + Psest_0843 0.60 -1.9
914,048 + Psest_0843 0.60 -1.4
914,049 - Psest_0843 0.60 -0.6
914,049 - Psest_0843 0.60 -0.6
914,049 - Psest_0843 0.60 -1.6
914,049 - Psest_0843 0.60 +0.4
914,049 - Psest_0843 0.60 -2.2
914,201 + Psest_0843 0.71 -3.1
914,201 + Psest_0843 0.71 -1.3
914,201 + Psest_0843 0.71 -0.6
914,201 + Psest_0843 0.71 -1.6
914,202 - Psest_0843 0.71 -1.1
914,202 - Psest_0843 0.71 -0.2
914,202 - Psest_0843 0.71 -1.3
914,207 + Psest_0843 0.71 -2.4
914,207 + Psest_0843 0.71 -0.0
914,207 + Psest_0843 0.71 -2.1
914,207 + Psest_0843 0.71 -1.4
914,207 + Psest_0843 0.71 -4.5
914,208 - Psest_0843 0.71 +0.6
914,229 - Psest_0843 0.73 -0.5
914,507 + -2.7
914,508 - -1.0
914,508 - -0.0
914,508 - +0.3
914,508 - -0.7
914,508 - -0.7
914,803 + Psest_0844 0.24 -0.7
914,803 + Psest_0844 0.24 -2.1
914,803 + Psest_0844 0.24 -2.1
914,803 + Psest_0844 0.24 -1.3
914,817 + Psest_0844 0.25 -0.2
914,818 - Psest_0844 0.25 -2.4
915,046 + Psest_0844 0.52 -0.6
915,047 - Psest_0844 0.52 -1.5
915,223 - Psest_0844 0.72 +0.4
915,288 + Psest_0844 0.80 -1.9
915,473 + +0.1
915,474 - +0.1
915,474 - +1.0
915,476 + +0.6
915,476 + -0.6
915,476 + -0.0
915,476 + +0.3
915,477 - -0.3
915,477 - +2.3
915,477 - +0.6

Or see this region's nucleotide sequence