Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0840 and Psest_0841 are separated by 74 nucleotides Psest_0841 and Psest_0842 overlap by 4 nucleotides Psest_0842 and Psest_0843 are separated by 49 nucleotides
Psest_0840: Psest_0840 - anaerobic ribonucleoside-triphosphate reductase, at 910,238 to 912,256
_0840
Psest_0841: Psest_0841 - hypothetical protein, at 912,331 to 912,486
_0841
Psest_0842: Psest_0842 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 912,483 to 913,178
_0842
Psest_0843: Psest_0843 - hypothetical protein, at 913,228 to 914,604
_0843
Position (kb)
912
913 Strain fitness (log2 ratio)
-2
-1
0
1 at 911.336 kb on + strand, within Psest_0840 at 911.513 kb on + strand, within Psest_0840 at 911.514 kb on - strand, within Psest_0840 at 911.828 kb on + strand, within Psest_0840 at 911.828 kb on + strand, within Psest_0840 at 911.828 kb on + strand, within Psest_0840 at 911.829 kb on - strand, within Psest_0840 at 911.829 kb on - strand, within Psest_0840 at 911.933 kb on + strand, within Psest_0840 at 911.936 kb on + strand, within Psest_0840 at 911.936 kb on + strand, within Psest_0840 at 911.937 kb on - strand, within Psest_0840 at 911.937 kb on - strand, within Psest_0840 at 911.937 kb on - strand, within Psest_0840 at 912.020 kb on + strand, within Psest_0840 at 912.020 kb on + strand, within Psest_0840 at 912.020 kb on + strand, within Psest_0840 at 912.021 kb on - strand, within Psest_0840 at 912.047 kb on + strand, within Psest_0840 at 912.047 kb on + strand, within Psest_0840 at 912.047 kb on + strand, within Psest_0840 at 912.047 kb on + strand, within Psest_0840 at 912.047 kb on + strand, within Psest_0840 at 912.047 kb on + strand, within Psest_0840 at 912.047 kb on + strand, within Psest_0840 at 912.048 kb on - strand, within Psest_0840 at 912.048 kb on - strand, within Psest_0840 at 912.048 kb on - strand, within Psest_0840 at 912.048 kb on - strand, within Psest_0840 at 912.048 kb on - strand, within Psest_0840 at 912.048 kb on - strand, within Psest_0840 at 912.048 kb on - strand, within Psest_0840 at 912.048 kb on - strand, within Psest_0840 at 912.049 kb on + strand, within Psest_0840 at 912.301 kb on + strand at 912.301 kb on + strand at 912.301 kb on + strand at 912.302 kb on - strand at 912.302 kb on - strand at 912.306 kb on - strand at 912.591 kb on + strand, within Psest_0842 at 912.768 kb on + strand, within Psest_0842 at 913.176 kb on + strand at 913.342 kb on + strand at 913.343 kb on - strand at 913.343 kb on - strand at 913.343 kb on - strand at 913.359 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 911,336 + Psest_0840 0.54 -0.6 911,513 + Psest_0840 0.63 +0.8 911,514 - Psest_0840 0.63 -0.7 911,828 + Psest_0840 0.79 -0.7 911,828 + Psest_0840 0.79 +1.7 911,828 + Psest_0840 0.79 -0.7 911,829 - Psest_0840 0.79 -2.0 911,829 - Psest_0840 0.79 -0.1 911,933 + Psest_0840 0.84 -0.1 911,936 + Psest_0840 0.84 -0.0 911,936 + Psest_0840 0.84 +0.9 911,937 - Psest_0840 0.84 -0.3 911,937 - Psest_0840 0.84 -0.4 911,937 - Psest_0840 0.84 +0.5 912,020 + Psest_0840 0.88 +0.1 912,020 + Psest_0840 0.88 +0.4 912,020 + Psest_0840 0.88 +0.7 912,021 - Psest_0840 0.88 +0.3 912,047 + Psest_0840 0.90 +0.8 912,047 + Psest_0840 0.90 -2.2 912,047 + Psest_0840 0.90 +0.4 912,047 + Psest_0840 0.90 +0.1 912,047 + Psest_0840 0.90 -0.4 912,047 + Psest_0840 0.90 -1.8 912,047 + Psest_0840 0.90 +0.1 912,048 - Psest_0840 0.90 -2.0 912,048 - Psest_0840 0.90 +1.0 912,048 - Psest_0840 0.90 +0.8 912,048 - Psest_0840 0.90 -1.2 912,048 - Psest_0840 0.90 +1.0 912,048 - Psest_0840 0.90 +0.8 912,048 - Psest_0840 0.90 +0.9 912,048 - Psest_0840 0.90 -1.3 912,049 + Psest_0840 0.90 -0.5 912,301 + +1.2 912,301 + -0.3 912,301 + +1.1 912,302 - -0.8 912,302 - +1.3 912,306 - +0.5 912,591 + Psest_0842 0.16 -1.4 912,768 + Psest_0842 0.41 -0.1 913,176 + +0.8 913,342 + -1.1 913,343 - +0.5 913,343 - -0.7 913,343 - -1.1 913,359 - -1.0
Or see this region's nucleotide sequence