Experiment: Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0170 and Psest_0172 are separated by 218 nucleotides Psest_0172 and Psest_0173 overlap by 4 nucleotides Psest_0173 and Psest_0174 are separated by 129 nucleotides Psest_0174 and Psest_0175 are separated by 16 nucleotides
Psest_0170: Psest_0170 - 5,10-methenyltetrahydrofolate synthetase, at 166,013 to 166,615
_0170
Psest_0172: Psest_0172 - Uncharacterized protein conserved in bacteria, at 166,834 to 167,148
_0172
Psest_0173: Psest_0173 - TIGR02449 family protein, at 167,145 to 167,354
_0173
Psest_0174: Psest_0174 - Uncharacterized protein conserved in bacteria, at 167,484 to 168,038
_0174
Psest_0175: Psest_0175 - Xaa-Pro aminopeptidase, at 168,055 to 169,389
_0175
Position (kb) 167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 166.173 kb on + strand, within Psest_0170 at 166.174 kb on - strand, within Psest_0170 at 166.174 kb on - strand, within Psest_0170 at 166.174 kb on - strand, within Psest_0170 at 166.174 kb on - strand, within Psest_0170 at 166.174 kb on - strand, within Psest_0170 at 166.174 kb on - strand, within Psest_0170 at 166.174 kb on - strand, within Psest_0170 at 166.174 kb on - strand, within Psest_0170 at 166.383 kb on + strand, within Psest_0170 at 166.383 kb on + strand, within Psest_0170 at 166.383 kb on + strand, within Psest_0170 at 166.383 kb on + strand, within Psest_0170 at 166.383 kb on + strand, within Psest_0170 at 166.384 kb on - strand, within Psest_0170 at 166.384 kb on - strand, within Psest_0170 at 166.384 kb on - strand, within Psest_0170 at 166.456 kb on - strand, within Psest_0170 at 166.456 kb on - strand, within Psest_0170 at 166.456 kb on - strand, within Psest_0170 at 166.649 kb on + strand at 166.650 kb on - strand at 166.683 kb on + strand at 166.695 kb on + strand at 166.696 kb on - strand at 166.696 kb on - strand at 166.731 kb on + strand at 166.731 kb on + strand at 166.731 kb on + strand at 166.731 kb on + strand at 166.731 kb on + strand at 166.732 kb on - strand at 166.732 kb on - strand at 166.732 kb on - strand at 166.732 kb on - strand at 166.737 kb on + strand at 166.737 kb on + strand at 166.749 kb on + strand at 166.750 kb on - strand at 166.809 kb on + strand at 166.809 kb on + strand at 166.809 kb on + strand at 166.809 kb on + strand at 166.810 kb on - strand at 166.810 kb on - strand at 166.810 kb on - strand at 166.810 kb on - strand at 166.810 kb on - strand at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 167.102 kb on + strand, within Psest_0172 at 167.102 kb on + strand, within Psest_0172 at 167.102 kb on + strand, within Psest_0172 at 167.103 kb on - strand at 167.103 kb on - strand, within Psest_0172 at 167.103 kb on - strand, within Psest_0172 at 167.433 kb on - strand at 167.433 kb on - strand at 167.454 kb on - strand at 167.454 kb on - strand at 167.454 kb on - strand at 167.454 kb on - strand at 167.940 kb on + strand, within Psest_0174 at 167.940 kb on + strand, within Psest_0174 at 167.941 kb on - strand, within Psest_0174 at 167.941 kb on - strand, within Psest_0174 at 167.941 kb on - strand, within Psest_0174 at 167.958 kb on + strand, within Psest_0174 at 167.958 kb on + strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.274 kb on + strand, within Psest_0175 at 168.348 kb on + strand, within Psest_0175
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM remove 166,173 + Psest_0170 0.27 -0.3 166,174 - Psest_0170 0.27 -1.1 166,174 - Psest_0170 0.27 -0.8 166,174 - Psest_0170 0.27 -0.9 166,174 - Psest_0170 0.27 +0.3 166,174 - Psest_0170 0.27 -0.3 166,174 - Psest_0170 0.27 -2.8 166,174 - Psest_0170 0.27 +1.1 166,174 - Psest_0170 0.27 -1.0 166,383 + Psest_0170 0.61 -1.9 166,383 + Psest_0170 0.61 -2.1 166,383 + Psest_0170 0.61 -0.0 166,383 + Psest_0170 0.61 -0.6 166,383 + Psest_0170 0.61 -0.6 166,384 - Psest_0170 0.62 +0.2 166,384 - Psest_0170 0.62 -0.4 166,384 - Psest_0170 0.62 -0.3 166,456 - Psest_0170 0.73 -0.0 166,456 - Psest_0170 0.73 +1.0 166,456 - Psest_0170 0.73 -1.0 166,649 + -1.1 166,650 - -0.8 166,683 + -1.4 166,695 + +0.7 166,696 - -0.8 166,696 - -1.6 166,731 + -0.8 166,731 + -0.2 166,731 + +0.9 166,731 + -2.0 166,731 + -3.1 166,732 - -1.0 166,732 - -0.1 166,732 - -2.4 166,732 - -0.9 166,737 + +0.2 166,737 + -1.0 166,749 + -0.2 166,750 - +1.5 166,809 + -1.2 166,809 + +0.8 166,809 + -1.7 166,809 + -1.5 166,810 - -1.1 166,810 - -1.3 166,810 - +1.1 166,810 - +0.6 166,810 - -0.3 166,897 + Psest_0172 0.20 +0.8 166,897 + Psest_0172 0.20 -0.5 166,897 + Psest_0172 0.20 -0.6 166,897 + Psest_0172 0.20 -0.6 166,897 + Psest_0172 0.20 -1.5 166,897 + Psest_0172 0.20 -0.8 166,897 + Psest_0172 0.20 -0.6 166,897 + Psest_0172 0.20 +0.8 166,897 + Psest_0172 0.20 +0.8 166,898 - Psest_0172 0.20 +0.9 166,898 - Psest_0172 0.20 -1.1 166,898 - Psest_0172 0.20 -1.4 166,898 - Psest_0172 0.20 -1.1 166,898 - Psest_0172 0.20 +1.0 166,898 - Psest_0172 0.20 -1.0 166,898 - Psest_0172 0.20 +2.7 166,898 - Psest_0172 0.20 -1.4 166,898 - Psest_0172 0.20 +0.0 166,898 - Psest_0172 0.20 -0.6 166,898 - Psest_0172 0.20 -0.0 167,102 + Psest_0172 0.85 +0.2 167,102 + Psest_0172 0.85 +0.1 167,102 + Psest_0172 0.85 +0.8 167,103 - -0.0 167,103 - Psest_0172 0.85 +0.8 167,103 - Psest_0172 0.85 +1.1 167,433 - +0.8 167,433 - -0.2 167,454 - +0.1 167,454 - -0.7 167,454 - -1.5 167,454 - -2.2 167,940 + Psest_0174 0.82 -0.2 167,940 + Psest_0174 0.82 +1.0 167,941 - Psest_0174 0.82 +0.1 167,941 - Psest_0174 0.82 -2.9 167,941 - Psest_0174 0.82 -2.2 167,958 + Psest_0174 0.85 -0.3 167,958 + Psest_0174 0.85 -0.2 167,959 - Psest_0174 0.86 -0.8 167,959 - Psest_0174 0.86 -0.9 167,959 - Psest_0174 0.86 +0.8 167,959 - Psest_0174 0.86 -1.9 168,154 + -0.0 168,154 + -0.4 168,154 + -0.1 168,154 + -0.8 168,154 + -0.2 168,154 + +0.4 168,154 + -1.5 168,274 + Psest_0175 0.16 -2.4 168,348 + Psest_0175 0.22 -2.0
Or see this region's nucleotide sequence