Experiment: 4-Hydroxyphenylpropionic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23920 and PFLU_RS23925 are separated by 1 nucleotides PFLU_RS23925 and PFLU_RS23930 are separated by 107 nucleotides PFLU_RS23930 and PFLU_RS23935 are separated by 7 nucleotides PFLU_RS23935 and PFLU_RS23940 are separated by 177 nucleotides PFLU_RS23940 and PFLU_RS23945 are separated by 65 nucleotides
PFLU_RS23920: PFLU_RS23920 - septation protein A, at 5,359,369 to 5,359,965
_RS23920
PFLU_RS23925: PFLU_RS23925 - YciI family protein, at 5,359,967 to 5,360,266
_RS23925
PFLU_RS23930: PFLU_RS23930 - translation initiation factor 2, at 5,360,374 to 5,360,781
_RS23930
PFLU_RS23935: PFLU_RS23935 - response regulator transcription factor, at 5,360,789 to 5,361,466
_RS23935
PFLU_RS23940: PFLU_RS23940 - hypothetical protein, at 5,361,644 to 5,362,108
_RS23940
PFLU_RS23945: PFLU_RS23945 - HAMP domain-containing histidine kinase, at 5,362,174 to 5,363,517
_RS23945
Position (kb) 5360
5361
5362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5359.905 kb on + strand, within PFLU_RS23920 at 5359.905 kb on + strand, within PFLU_RS23920 at 5359.905 kb on + strand, within PFLU_RS23920 at 5359.905 kb on + strand, within PFLU_RS23920 at 5359.905 kb on + strand, within PFLU_RS23920 at 5359.906 kb on - strand at 5359.906 kb on - strand at 5359.909 kb on + strand at 5359.910 kb on - strand at 5359.973 kb on + strand at 5359.973 kb on + strand at 5359.973 kb on + strand at 5359.973 kb on + strand at 5359.974 kb on - strand at 5359.974 kb on - strand at 5359.974 kb on - strand at 5360.074 kb on + strand, within PFLU_RS23925 at 5360.074 kb on + strand, within PFLU_RS23925 at 5360.074 kb on + strand, within PFLU_RS23925 at 5360.074 kb on + strand, within PFLU_RS23925 at 5360.074 kb on + strand, within PFLU_RS23925 at 5360.074 kb on + strand, within PFLU_RS23925 at 5360.074 kb on + strand, within PFLU_RS23925 at 5360.075 kb on - strand, within PFLU_RS23925 at 5360.075 kb on - strand, within PFLU_RS23925 at 5360.075 kb on - strand, within PFLU_RS23925 at 5360.075 kb on - strand, within PFLU_RS23925 at 5360.075 kb on - strand, within PFLU_RS23925 at 5360.075 kb on - strand, within PFLU_RS23925 at 5360.075 kb on - strand, within PFLU_RS23925 at 5360.075 kb on - strand, within PFLU_RS23925 at 5360.075 kb on - strand, within PFLU_RS23925 at 5360.075 kb on - strand, within PFLU_RS23925 at 5360.204 kb on + strand, within PFLU_RS23925 at 5360.204 kb on + strand, within PFLU_RS23925 at 5360.204 kb on + strand, within PFLU_RS23925 at 5360.204 kb on + strand, within PFLU_RS23925 at 5360.204 kb on + strand, within PFLU_RS23925 at 5360.204 kb on + strand, within PFLU_RS23925 at 5360.205 kb on - strand, within PFLU_RS23925 at 5360.205 kb on - strand, within PFLU_RS23925 at 5360.205 kb on - strand, within PFLU_RS23925 at 5360.205 kb on - strand, within PFLU_RS23925 at 5360.205 kb on - strand, within PFLU_RS23925 at 5360.205 kb on - strand, within PFLU_RS23925 at 5360.205 kb on - strand, within PFLU_RS23925 at 5360.286 kb on + strand at 5360.286 kb on + strand at 5360.286 kb on + strand at 5360.287 kb on - strand at 5360.287 kb on - strand at 5360.287 kb on - strand at 5360.287 kb on - strand at 5360.306 kb on + strand at 5360.306 kb on + strand at 5360.306 kb on + strand at 5360.306 kb on + strand at 5360.306 kb on + strand at 5360.306 kb on + strand at 5360.306 kb on + strand at 5360.307 kb on - strand at 5360.307 kb on - strand at 5360.307 kb on - strand at 5360.307 kb on - strand at 5360.317 kb on + strand at 5360.317 kb on + strand at 5360.317 kb on + strand at 5360.318 kb on - strand at 5360.318 kb on - strand at 5360.349 kb on + strand at 5360.350 kb on - strand at 5360.350 kb on - strand at 5360.381 kb on + strand at 5360.381 kb on + strand at 5360.381 kb on + strand at 5360.381 kb on + strand at 5360.381 kb on + strand at 5360.381 kb on + strand at 5360.381 kb on + strand at 5360.382 kb on - strand at 5360.382 kb on - strand at 5360.382 kb on - strand at 5360.382 kb on - strand at 5360.382 kb on - strand at 5360.382 kb on - strand at 5360.382 kb on - strand at 5360.382 kb on - strand at 5360.382 kb on - strand at 5360.382 kb on - strand at 5360.408 kb on + strand at 5360.409 kb on - strand at 5360.571 kb on + strand, within PFLU_RS23930 at 5360.775 kb on - strand at 5360.775 kb on - strand at 5360.803 kb on - strand at 5360.803 kb on - strand at 5360.803 kb on - strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.808 kb on + strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.809 kb on - strand at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.946 kb on + strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5360.947 kb on - strand, within PFLU_RS23935 at 5361.052 kb on + strand, within PFLU_RS23935 at 5361.083 kb on + strand, within PFLU_RS23935 at 5361.083 kb on + strand, within PFLU_RS23935 at 5361.083 kb on + strand, within PFLU_RS23935 at 5361.084 kb on - strand, within PFLU_RS23935 at 5361.084 kb on - strand, within PFLU_RS23935 at 5361.167 kb on - strand, within PFLU_RS23935 at 5361.338 kb on - strand, within PFLU_RS23935 at 5361.380 kb on - strand, within PFLU_RS23935 at 5361.449 kb on + strand at 5361.449 kb on + strand at 5361.450 kb on - strand at 5361.450 kb on - strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.452 kb on + strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.453 kb on - strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.455 kb on + strand at 5361.456 kb on - strand at 5361.456 kb on - strand at 5361.456 kb on - strand at 5361.456 kb on - strand at 5361.456 kb on - strand at 5361.456 kb on - strand at 5361.487 kb on - strand at 5361.561 kb on + strand at 5361.562 kb on - strand at 5361.596 kb on + strand at 5361.597 kb on - strand at 5361.597 kb on - strand at 5361.597 kb on - strand at 5361.597 kb on - strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.601 kb on + strand at 5361.602 kb on - strand at 5361.602 kb on - strand at 5361.602 kb on - strand at 5361.602 kb on - strand at 5361.602 kb on - strand at 5361.625 kb on + strand at 5361.880 kb on + strand, within PFLU_RS23940 at 5361.881 kb on - strand, within PFLU_RS23940 at 5361.881 kb on - strand, within PFLU_RS23940 at 5361.881 kb on - strand, within PFLU_RS23940 at 5361.899 kb on + strand, within PFLU_RS23940 at 5361.899 kb on + strand, within PFLU_RS23940 at 5361.900 kb on - strand, within PFLU_RS23940 at 5361.900 kb on - strand, within PFLU_RS23940 at 5361.907 kb on + strand, within PFLU_RS23940 at 5361.908 kb on - strand, within PFLU_RS23940 at 5362.107 kb on - strand at 5362.107 kb on - strand at 5362.263 kb on + strand at 5362.263 kb on + strand at 5362.263 kb on + strand at 5362.263 kb on + strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.264 kb on - strand at 5362.333 kb on + strand, within PFLU_RS23945 at 5362.333 kb on + strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.334 kb on - strand, within PFLU_RS23945 at 5362.380 kb on + strand, within PFLU_RS23945 at 5362.380 kb on + strand, within PFLU_RS23945 at 5362.380 kb on + strand, within PFLU_RS23945 at 5362.380 kb on + strand, within PFLU_RS23945 at 5362.381 kb on - strand, within PFLU_RS23945 at 5362.390 kb on + strand, within PFLU_RS23945 at 5362.391 kb on - strand, within PFLU_RS23945 at 5362.410 kb on - strand, within PFLU_RS23945 at 5362.443 kb on + strand, within PFLU_RS23945 at 5362.444 kb on - strand, within PFLU_RS23945 at 5362.444 kb on - strand, within PFLU_RS23945
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 5 mM remove 5,359,905 + PFLU_RS23920 0.90 +0.1 5,359,905 + PFLU_RS23920 0.90 -1.3 5,359,905 + PFLU_RS23920 0.90 -1.4 5,359,905 + PFLU_RS23920 0.90 -0.6 5,359,905 + PFLU_RS23920 0.90 +0.2 5,359,906 - +1.7 5,359,906 - -0.3 5,359,909 + +1.7 5,359,910 - +1.7 5,359,973 + -0.1 5,359,973 + +0.7 5,359,973 + +1.0 5,359,973 + -0.8 5,359,974 - -0.7 5,359,974 - +0.4 5,359,974 - +0.3 5,360,074 + PFLU_RS23925 0.36 +0.9 5,360,074 + PFLU_RS23925 0.36 +1.0 5,360,074 + PFLU_RS23925 0.36 +0.4 5,360,074 + PFLU_RS23925 0.36 +0.3 5,360,074 + PFLU_RS23925 0.36 -1.0 5,360,074 + PFLU_RS23925 0.36 +1.9 5,360,074 + PFLU_RS23925 0.36 +1.7 5,360,075 - PFLU_RS23925 0.36 -1.6 5,360,075 - PFLU_RS23925 0.36 +0.9 5,360,075 - PFLU_RS23925 0.36 +2.3 5,360,075 - PFLU_RS23925 0.36 +0.7 5,360,075 - PFLU_RS23925 0.36 +0.5 5,360,075 - PFLU_RS23925 0.36 +0.4 5,360,075 - PFLU_RS23925 0.36 +1.1 5,360,075 - PFLU_RS23925 0.36 -1.0 5,360,075 - PFLU_RS23925 0.36 +1.1 5,360,075 - PFLU_RS23925 0.36 +1.0 5,360,204 + PFLU_RS23925 0.79 +1.1 5,360,204 + PFLU_RS23925 0.79 -0.6 5,360,204 + PFLU_RS23925 0.79 +0.7 5,360,204 + PFLU_RS23925 0.79 -0.4 5,360,204 + PFLU_RS23925 0.79 -0.3 5,360,204 + PFLU_RS23925 0.79 +0.5 5,360,205 - PFLU_RS23925 0.79 -0.2 5,360,205 - PFLU_RS23925 0.79 +1.2 5,360,205 - PFLU_RS23925 0.79 -1.6 5,360,205 - PFLU_RS23925 0.79 -1.1 5,360,205 - PFLU_RS23925 0.79 +0.0 5,360,205 - PFLU_RS23925 0.79 +2.4 5,360,205 - PFLU_RS23925 0.79 -1.1 5,360,286 + -0.4 5,360,286 + -3.4 5,360,286 + -1.5 5,360,287 - -0.2 5,360,287 - +0.4 5,360,287 - +1.9 5,360,287 - +0.7 5,360,306 + +0.2 5,360,306 + +0.1 5,360,306 + -1.3 5,360,306 + +0.1 5,360,306 + +0.8 5,360,306 + +0.1 5,360,306 + +0.7 5,360,307 - -0.6 5,360,307 - -0.6 5,360,307 - +0.4 5,360,307 - -1.4 5,360,317 + -0.1 5,360,317 + +0.7 5,360,317 + -2.6 5,360,318 - +0.4 5,360,318 - +0.7 5,360,349 + +1.0 5,360,350 - +0.5 5,360,350 - -1.1 5,360,381 + -0.1 5,360,381 + -0.6 5,360,381 + +0.9 5,360,381 + +0.3 5,360,381 + -0.3 5,360,381 + -1.9 5,360,381 + -0.5 5,360,382 - +0.4 5,360,382 - +0.1 5,360,382 - +1.0 5,360,382 - -0.5 5,360,382 - -0.3 5,360,382 - +0.6 5,360,382 - +0.7 5,360,382 - -1.7 5,360,382 - +0.1 5,360,382 - -1.1 5,360,408 + -1.3 5,360,409 - -0.5 5,360,571 + PFLU_RS23930 0.48 -0.5 5,360,775 - +2.1 5,360,775 - +0.8 5,360,803 - +1.4 5,360,803 - -0.7 5,360,803 - -2.3 5,360,808 + -0.6 5,360,808 + -1.3 5,360,808 + -0.0 5,360,808 + +0.4 5,360,808 + +0.1 5,360,808 + +0.0 5,360,808 + +0.9 5,360,808 + -0.7 5,360,808 + -1.4 5,360,809 - +1.7 5,360,809 - -0.4 5,360,809 - -1.1 5,360,809 - +1.2 5,360,809 - +0.1 5,360,809 - -2.5 5,360,809 - -1.1 5,360,809 - +0.7 5,360,809 - +0.1 5,360,809 - -0.6 5,360,809 - -0.2 5,360,809 - +0.1 5,360,809 - +1.7 5,360,946 + PFLU_RS23935 0.23 +0.1 5,360,946 + PFLU_RS23935 0.23 +0.1 5,360,946 + PFLU_RS23935 0.23 -0.6 5,360,946 + PFLU_RS23935 0.23 -0.7 5,360,946 + PFLU_RS23935 0.23 -0.0 5,360,946 + PFLU_RS23935 0.23 -0.3 5,360,946 + PFLU_RS23935 0.23 -0.3 5,360,946 + PFLU_RS23935 0.23 +0.4 5,360,947 - PFLU_RS23935 0.23 +2.4 5,360,947 - PFLU_RS23935 0.23 +0.2 5,360,947 - PFLU_RS23935 0.23 -1.3 5,360,947 - PFLU_RS23935 0.23 +0.5 5,360,947 - PFLU_RS23935 0.23 +2.6 5,360,947 - PFLU_RS23935 0.23 -0.9 5,360,947 - PFLU_RS23935 0.23 +0.2 5,360,947 - PFLU_RS23935 0.23 -0.3 5,360,947 - PFLU_RS23935 0.23 -1.0 5,360,947 - PFLU_RS23935 0.23 -0.9 5,360,947 - PFLU_RS23935 0.23 +0.0 5,360,947 - PFLU_RS23935 0.23 +0.2 5,361,052 + PFLU_RS23935 0.39 +0.3 5,361,083 + PFLU_RS23935 0.43 -2.6 5,361,083 + PFLU_RS23935 0.43 -0.5 5,361,083 + PFLU_RS23935 0.43 -0.5 5,361,084 - PFLU_RS23935 0.44 -1.5 5,361,084 - PFLU_RS23935 0.44 +4.0 5,361,167 - PFLU_RS23935 0.56 +0.6 5,361,338 - PFLU_RS23935 0.81 +1.0 5,361,380 - PFLU_RS23935 0.87 -0.8 5,361,449 + -1.8 5,361,449 + +1.5 5,361,450 - -0.6 5,361,450 - -0.1 5,361,452 + -0.3 5,361,452 + -0.8 5,361,452 + -0.2 5,361,452 + -0.3 5,361,452 + +1.3 5,361,452 + -0.1 5,361,452 + -0.5 5,361,452 + -0.1 5,361,452 + -1.5 5,361,452 + -0.5 5,361,452 + -0.5 5,361,452 + +0.1 5,361,452 + -0.0 5,361,452 + +0.4 5,361,452 + -0.4 5,361,453 - -1.1 5,361,453 - +0.5 5,361,453 - -0.6 5,361,453 - +0.2 5,361,453 - +0.6 5,361,453 - -0.4 5,361,453 - -0.2 5,361,453 - -0.1 5,361,453 - -2.0 5,361,453 - -0.2 5,361,453 - +0.1 5,361,453 - -2.4 5,361,455 + -1.8 5,361,455 + +0.1 5,361,455 + +0.5 5,361,455 + -1.9 5,361,455 + -0.6 5,361,455 + -0.5 5,361,455 + -0.2 5,361,455 + +1.7 5,361,455 + +0.1 5,361,455 + -1.6 5,361,456 - -1.1 5,361,456 - -0.3 5,361,456 - -0.6 5,361,456 - -0.3 5,361,456 - -0.5 5,361,456 - +0.1 5,361,487 - -0.8 5,361,561 + -0.2 5,361,562 - -0.4 5,361,596 + +0.8 5,361,597 - -1.1 5,361,597 - -0.7 5,361,597 - +0.5 5,361,597 - +1.1 5,361,601 + +0.2 5,361,601 + -0.3 5,361,601 + -1.1 5,361,601 + -3.0 5,361,601 + -0.6 5,361,601 + +0.5 5,361,601 + +0.6 5,361,601 + -1.6 5,361,601 + +0.1 5,361,601 + -0.4 5,361,601 + -1.0 5,361,601 + -0.3 5,361,602 - -0.8 5,361,602 - -0.1 5,361,602 - -0.6 5,361,602 - +0.5 5,361,602 - -0.2 5,361,625 + +0.0 5,361,880 + PFLU_RS23940 0.51 +0.6 5,361,881 - PFLU_RS23940 0.51 +0.3 5,361,881 - PFLU_RS23940 0.51 +0.1 5,361,881 - PFLU_RS23940 0.51 -0.4 5,361,899 + PFLU_RS23940 0.55 +1.3 5,361,899 + PFLU_RS23940 0.55 +1.0 5,361,900 - PFLU_RS23940 0.55 +0.2 5,361,900 - PFLU_RS23940 0.55 -0.5 5,361,907 + PFLU_RS23940 0.57 -0.8 5,361,908 - PFLU_RS23940 0.57 +0.6 5,362,107 - -0.5 5,362,107 - +1.4 5,362,263 + +0.2 5,362,263 + -0.8 5,362,263 + +0.9 5,362,263 + +0.9 5,362,264 - +0.3 5,362,264 - -0.4 5,362,264 - -0.3 5,362,264 - -0.8 5,362,264 - -0.6 5,362,264 - +1.1 5,362,264 - +1.7 5,362,264 - -1.6 5,362,264 - +3.0 5,362,333 + PFLU_RS23945 0.12 -0.3 5,362,333 + PFLU_RS23945 0.12 +1.3 5,362,334 - PFLU_RS23945 0.12 +0.3 5,362,334 - PFLU_RS23945 0.12 -3.6 5,362,334 - PFLU_RS23945 0.12 +0.2 5,362,334 - PFLU_RS23945 0.12 -0.4 5,362,334 - PFLU_RS23945 0.12 -0.2 5,362,334 - PFLU_RS23945 0.12 -0.6 5,362,380 + PFLU_RS23945 0.15 -0.9 5,362,380 + PFLU_RS23945 0.15 -0.3 5,362,380 + PFLU_RS23945 0.15 +0.0 5,362,380 + PFLU_RS23945 0.15 +0.4 5,362,381 - PFLU_RS23945 0.15 +2.7 5,362,390 + PFLU_RS23945 0.16 +2.0 5,362,391 - PFLU_RS23945 0.16 +0.2 5,362,410 - PFLU_RS23945 0.18 -0.0 5,362,443 + PFLU_RS23945 0.20 +0.5 5,362,444 - PFLU_RS23945 0.20 +0.5 5,362,444 - PFLU_RS23945 0.20 +0.6
Or see this region's nucleotide sequence