Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22995

Experiment: 4-Hydroxyphenylpropionic (C) 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS22990 and PFLU_RS22995 overlap by 4 nucleotidesPFLU_RS22995 and PFLU_RS23000 are separated by 70 nucleotidesPFLU_RS23000 and PFLU_RS23005 are separated by 16 nucleotides PFLU_RS22990: PFLU_RS22990 - ADP-ribosylglycohydrolase, at 5,169,286 to 5,170,287 _RS22990 PFLU_RS22995: PFLU_RS22995 - GntR family transcriptional regulator, at 5,170,284 to 5,170,997 _RS22995 PFLU_RS23000: PFLU_RS23000 - DUF1285 domain-containing protein, at 5,171,068 to 5,171,628 _RS23000 PFLU_RS23005: PFLU_RS23005 - DUF4823 domain-containing protein, at 5,171,645 to 5,172,250 _RS23005 Position (kb) 5170 5171Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5169.563 kb on + strand, within PFLU_RS22990at 5169.563 kb on + strand, within PFLU_RS22990at 5169.563 kb on + strand, within PFLU_RS22990at 5169.564 kb on - strand, within PFLU_RS22990at 5169.564 kb on - strand, within PFLU_RS22990at 5169.564 kb on - strand, within PFLU_RS22990at 5169.732 kb on + strand, within PFLU_RS22990at 5169.825 kb on + strand, within PFLU_RS22990at 5169.873 kb on + strand, within PFLU_RS22990at 5169.873 kb on + strand, within PFLU_RS22990at 5169.874 kb on - strand, within PFLU_RS22990at 5169.874 kb on - strand, within PFLU_RS22990at 5169.874 kb on - strand, within PFLU_RS22990at 5169.895 kb on - strand, within PFLU_RS22990at 5170.254 kb on - strandat 5170.348 kb on + strandat 5170.348 kb on + strandat 5170.348 kb on + strandat 5170.349 kb on - strandat 5170.349 kb on - strandat 5170.349 kb on - strandat 5170.349 kb on - strandat 5170.349 kb on - strandat 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.375 kb on + strand, within PFLU_RS22995at 5170.376 kb on - strand, within PFLU_RS22995at 5170.376 kb on - strand, within PFLU_RS22995at 5170.376 kb on - strand, within PFLU_RS22995at 5170.376 kb on - strand, within PFLU_RS22995at 5170.376 kb on - strand, within PFLU_RS22995at 5170.382 kb on + strand, within PFLU_RS22995at 5170.382 kb on + strand, within PFLU_RS22995at 5170.489 kb on + strand, within PFLU_RS22995at 5170.816 kb on + strand, within PFLU_RS22995at 5170.816 kb on + strand, within PFLU_RS22995at 5170.816 kb on + strand, within PFLU_RS22995at 5170.816 kb on + strand, within PFLU_RS22995at 5170.816 kb on + strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5170.817 kb on - strand, within PFLU_RS22995at 5170.992 kb on - strandat 5171.041 kb on + strandat 5171.041 kb on + strandat 5171.041 kb on + strandat 5171.168 kb on + strand, within PFLU_RS23000at 5171.168 kb on + strand, within PFLU_RS23000at 5171.168 kb on + strand, within PFLU_RS23000at 5171.168 kb on + strand, within PFLU_RS23000at 5171.168 kb on + strand, within PFLU_RS23000at 5171.169 kb on - strand, within PFLU_RS23000at 5171.169 kb on - strand, within PFLU_RS23000at 5171.169 kb on - strand, within PFLU_RS23000at 5171.169 kb on - strand, within PFLU_RS23000at 5171.215 kb on + strand, within PFLU_RS23000at 5171.215 kb on + strand, within PFLU_RS23000at 5171.215 kb on + strand, within PFLU_RS23000at 5171.215 kb on + strand, within PFLU_RS23000at 5171.215 kb on + strand, within PFLU_RS23000at 5171.215 kb on + strand, within PFLU_RS23000at 5171.215 kb on + strand, within PFLU_RS23000at 5171.216 kb on - strand, within PFLU_RS23000at 5171.216 kb on - strand, within PFLU_RS23000at 5171.216 kb on - strand, within PFLU_RS23000at 5171.219 kb on + strand, within PFLU_RS23000at 5171.220 kb on - strand, within PFLU_RS23000at 5171.341 kb on + strand, within PFLU_RS23000at 5171.341 kb on + strand, within PFLU_RS23000at 5171.341 kb on + strand, within PFLU_RS23000at 5171.341 kb on + strand, within PFLU_RS23000at 5171.342 kb on - strand, within PFLU_RS23000at 5171.342 kb on - strand, within PFLU_RS23000at 5171.342 kb on - strand, within PFLU_RS23000at 5171.342 kb on - strand, within PFLU_RS23000at 5171.342 kb on - strand, within PFLU_RS23000at 5171.342 kb on - strand, within PFLU_RS23000at 5171.353 kb on - strand, within PFLU_RS23000at 5171.417 kb on + strand, within PFLU_RS23000at 5171.417 kb on + strand, within PFLU_RS23000at 5171.417 kb on + strand, within PFLU_RS23000at 5171.418 kb on - strand, within PFLU_RS23000at 5171.418 kb on - strand, within PFLU_RS23000at 5171.418 kb on - strand, within PFLU_RS23000at 5171.492 kb on + strand, within PFLU_RS23000at 5171.492 kb on + strand, within PFLU_RS23000at 5171.493 kb on - strand, within PFLU_RS23000at 5171.493 kb on - strand, within PFLU_RS23000at 5171.493 kb on - strand, within PFLU_RS23000at 5171.646 kb on + strandat 5171.646 kb on + strandat 5171.646 kb on + strandat 5171.646 kb on + strandat 5171.680 kb on - strandat 5171.680 kb on - strandat 5171.680 kb on - strandat 5171.680 kb on - strandat 5171.735 kb on + strand, within PFLU_RS23005at 5171.755 kb on + strand, within PFLU_RS23005at 5171.755 kb on + strand, within PFLU_RS23005at 5171.755 kb on + strand, within PFLU_RS23005at 5171.755 kb on + strand, within PFLU_RS23005at 5171.755 kb on + strand, within PFLU_RS23005at 5171.755 kb on + strand, within PFLU_RS23005at 5171.755 kb on + strand, within PFLU_RS23005at 5171.756 kb on - strand, within PFLU_RS23005at 5171.756 kb on - strand, within PFLU_RS23005at 5171.756 kb on - strand, within PFLU_RS23005at 5171.764 kb on + strand, within PFLU_RS23005at 5171.764 kb on + strand, within PFLU_RS23005at 5171.764 kb on + strand, within PFLU_RS23005at 5171.764 kb on + strand, within PFLU_RS23005at 5171.765 kb on - strand, within PFLU_RS23005at 5171.765 kb on - strand, within PFLU_RS23005at 5171.765 kb on - strand, within PFLU_RS23005at 5171.765 kb on - strand, within PFLU_RS23005at 5171.765 kb on - strand, within PFLU_RS23005at 5171.765 kb on - strand, within PFLU_RS23005at 5171.775 kb on + strand, within PFLU_RS23005at 5171.775 kb on + strand, within PFLU_RS23005at 5171.775 kb on + strand, within PFLU_RS23005at 5171.775 kb on + strand, within PFLU_RS23005at 5171.775 kb on + strand, within PFLU_RS23005at 5171.776 kb on - strand, within PFLU_RS23005at 5171.776 kb on - strand, within PFLU_RS23005at 5171.776 kb on - strand, within PFLU_RS23005at 5171.904 kb on + strand, within PFLU_RS23005at 5171.904 kb on + strand, within PFLU_RS23005at 5171.905 kb on - strand, within PFLU_RS23005at 5171.905 kb on - strand, within PFLU_RS23005at 5171.905 kb on - strand, within PFLU_RS23005at 5171.905 kb on - strand, within PFLU_RS23005at 5171.913 kb on + strand, within PFLU_RS23005at 5171.914 kb on - strand, within PFLU_RS23005at 5171.914 kb on - strand, within PFLU_RS23005at 5171.914 kb on - strand, within PFLU_RS23005at 5171.914 kb on - strand, within PFLU_RS23005at 5171.914 kb on - strand, within PFLU_RS23005at 5171.994 kb on + strand, within PFLU_RS23005at 5171.994 kb on + strand, within PFLU_RS23005at 5171.994 kb on + strand, within PFLU_RS23005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 5 mM
remove
5,169,563 + PFLU_RS22990 0.28 +1.4
5,169,563 + PFLU_RS22990 0.28 +2.6
5,169,563 + PFLU_RS22990 0.28 -0.0
5,169,564 - PFLU_RS22990 0.28 -0.4
5,169,564 - PFLU_RS22990 0.28 +0.9
5,169,564 - PFLU_RS22990 0.28 -0.7
5,169,732 + PFLU_RS22990 0.45 +0.3
5,169,825 + PFLU_RS22990 0.54 -0.0
5,169,873 + PFLU_RS22990 0.59 +0.9
5,169,873 + PFLU_RS22990 0.59 +0.1
5,169,874 - PFLU_RS22990 0.59 +1.1
5,169,874 - PFLU_RS22990 0.59 +0.6
5,169,874 - PFLU_RS22990 0.59 -1.6
5,169,895 - PFLU_RS22990 0.61 +1.5
5,170,254 - -0.6
5,170,348 + +0.6
5,170,348 + +1.6
5,170,348 + +0.6
5,170,349 - -0.5
5,170,349 - +1.0
5,170,349 - -1.6
5,170,349 - +0.3
5,170,349 - -0.9
5,170,375 + PFLU_RS22995 0.13 -0.5
5,170,375 + PFLU_RS22995 0.13 -1.1
5,170,375 + PFLU_RS22995 0.13 -1.3
5,170,375 + PFLU_RS22995 0.13 +0.6
5,170,375 + PFLU_RS22995 0.13 -1.2
5,170,375 + PFLU_RS22995 0.13 +1.2
5,170,375 + PFLU_RS22995 0.13 +0.6
5,170,375 + PFLU_RS22995 0.13 +0.4
5,170,375 + PFLU_RS22995 0.13 -1.0
5,170,375 + PFLU_RS22995 0.13 -0.3
5,170,375 + PFLU_RS22995 0.13 -0.8
5,170,376 - PFLU_RS22995 0.13 -0.1
5,170,376 - PFLU_RS22995 0.13 +0.2
5,170,376 - PFLU_RS22995 0.13 +0.5
5,170,376 - PFLU_RS22995 0.13 +0.6
5,170,376 - PFLU_RS22995 0.13 -0.7
5,170,382 + PFLU_RS22995 0.14 -0.1
5,170,382 + PFLU_RS22995 0.14 +0.3
5,170,489 + PFLU_RS22995 0.29 -0.2
5,170,816 + PFLU_RS22995 0.75 +1.4
5,170,816 + PFLU_RS22995 0.75 -0.6
5,170,816 + PFLU_RS22995 0.75 +0.1
5,170,816 + PFLU_RS22995 0.75 +1.6
5,170,816 + PFLU_RS22995 0.75 -0.1
5,170,817 - PFLU_RS22995 0.75 +0.2
5,170,817 - PFLU_RS22995 0.75 +1.6
5,170,817 - PFLU_RS22995 0.75 -0.6
5,170,817 - PFLU_RS22995 0.75 -0.4
5,170,817 - PFLU_RS22995 0.75 -1.4
5,170,817 - PFLU_RS22995 0.75 -0.7
5,170,817 - PFLU_RS22995 0.75 -1.3
5,170,992 - +0.8
5,171,041 + -1.2
5,171,041 + -0.1
5,171,041 + -0.2
5,171,168 + PFLU_RS23000 0.18 +0.4
5,171,168 + PFLU_RS23000 0.18 -0.4
5,171,168 + PFLU_RS23000 0.18 +0.4
5,171,168 + PFLU_RS23000 0.18 +0.2
5,171,168 + PFLU_RS23000 0.18 +1.6
5,171,169 - PFLU_RS23000 0.18 +0.7
5,171,169 - PFLU_RS23000 0.18 -2.3
5,171,169 - PFLU_RS23000 0.18 +0.1
5,171,169 - PFLU_RS23000 0.18 -0.4
5,171,215 + PFLU_RS23000 0.26 -0.7
5,171,215 + PFLU_RS23000 0.26 -0.4
5,171,215 + PFLU_RS23000 0.26 +0.6
5,171,215 + PFLU_RS23000 0.26 +0.3
5,171,215 + PFLU_RS23000 0.26 -0.7
5,171,215 + PFLU_RS23000 0.26 -2.4
5,171,215 + PFLU_RS23000 0.26 -0.9
5,171,216 - PFLU_RS23000 0.26 +0.6
5,171,216 - PFLU_RS23000 0.26 +1.3
5,171,216 - PFLU_RS23000 0.26 +0.5
5,171,219 + PFLU_RS23000 0.27 -0.9
5,171,220 - PFLU_RS23000 0.27 -0.5
5,171,341 + PFLU_RS23000 0.49 +0.6
5,171,341 + PFLU_RS23000 0.49 -0.8
5,171,341 + PFLU_RS23000 0.49 -0.8
5,171,341 + PFLU_RS23000 0.49 +0.2
5,171,342 - PFLU_RS23000 0.49 -1.4
5,171,342 - PFLU_RS23000 0.49 -1.4
5,171,342 - PFLU_RS23000 0.49 -0.8
5,171,342 - PFLU_RS23000 0.49 -2.3
5,171,342 - PFLU_RS23000 0.49 -0.6
5,171,342 - PFLU_RS23000 0.49 -0.5
5,171,353 - PFLU_RS23000 0.51 -1.4
5,171,417 + PFLU_RS23000 0.62 -1.6
5,171,417 + PFLU_RS23000 0.62 -1.7
5,171,417 + PFLU_RS23000 0.62 -1.2
5,171,418 - PFLU_RS23000 0.62 -2.4
5,171,418 - PFLU_RS23000 0.62 -2.9
5,171,418 - PFLU_RS23000 0.62 -0.9
5,171,492 + PFLU_RS23000 0.76 -0.1
5,171,492 + PFLU_RS23000 0.76 -0.6
5,171,493 - PFLU_RS23000 0.76 +0.8
5,171,493 - PFLU_RS23000 0.76 +0.6
5,171,493 - PFLU_RS23000 0.76 +0.8
5,171,646 + +4.2
5,171,646 + +0.1
5,171,646 + -1.1
5,171,646 + +0.1
5,171,680 - -0.3
5,171,680 - +0.8
5,171,680 - -1.5
5,171,680 - -1.8
5,171,735 + PFLU_RS23005 0.15 -0.2
5,171,755 + PFLU_RS23005 0.18 +0.5
5,171,755 + PFLU_RS23005 0.18 +0.8
5,171,755 + PFLU_RS23005 0.18 -0.6
5,171,755 + PFLU_RS23005 0.18 -1.9
5,171,755 + PFLU_RS23005 0.18 +0.3
5,171,755 + PFLU_RS23005 0.18 -0.1
5,171,755 + PFLU_RS23005 0.18 +0.9
5,171,756 - PFLU_RS23005 0.18 +0.3
5,171,756 - PFLU_RS23005 0.18 +1.2
5,171,756 - PFLU_RS23005 0.18 -0.9
5,171,764 + PFLU_RS23005 0.20 +0.3
5,171,764 + PFLU_RS23005 0.20 -1.1
5,171,764 + PFLU_RS23005 0.20 +0.4
5,171,764 + PFLU_RS23005 0.20 +0.1
5,171,765 - PFLU_RS23005 0.20 +0.1
5,171,765 - PFLU_RS23005 0.20 +0.1
5,171,765 - PFLU_RS23005 0.20 -0.8
5,171,765 - PFLU_RS23005 0.20 -0.2
5,171,765 - PFLU_RS23005 0.20 -0.1
5,171,765 - PFLU_RS23005 0.20 +0.6
5,171,775 + PFLU_RS23005 0.21 -0.6
5,171,775 + PFLU_RS23005 0.21 +2.8
5,171,775 + PFLU_RS23005 0.21 +2.0
5,171,775 + PFLU_RS23005 0.21 +0.3
5,171,775 + PFLU_RS23005 0.21 -0.7
5,171,776 - PFLU_RS23005 0.22 -0.9
5,171,776 - PFLU_RS23005 0.22 -0.0
5,171,776 - PFLU_RS23005 0.22 -0.2
5,171,904 + PFLU_RS23005 0.43 +0.1
5,171,904 + PFLU_RS23005 0.43 +1.0
5,171,905 - PFLU_RS23005 0.43 +1.0
5,171,905 - PFLU_RS23005 0.43 +0.5
5,171,905 - PFLU_RS23005 0.43 +0.5
5,171,905 - PFLU_RS23005 0.43 -0.2
5,171,913 + PFLU_RS23005 0.44 -0.8
5,171,914 - PFLU_RS23005 0.44 -0.4
5,171,914 - PFLU_RS23005 0.44 -0.9
5,171,914 - PFLU_RS23005 0.44 +0.4
5,171,914 - PFLU_RS23005 0.44 +0.9
5,171,914 - PFLU_RS23005 0.44 +0.1
5,171,994 + PFLU_RS23005 0.58 -0.4
5,171,994 + PFLU_RS23005 0.58 +1.0
5,171,994 + PFLU_RS23005 0.58 -0.1

Or see this region's nucleotide sequence