Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09960

Experiment: 4-Hydroxyphenylpropionic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 5 mM
2,199,198	-		PFLU_RS09955	0.24	+1.1
2,199,400	+		PFLU_RS09955	0.52	+0.2
2,199,401	-		PFLU_RS09955	0.52	-2.0
2,199,401	-		PFLU_RS09955	0.52	+0.5
2,199,435	+		PFLU_RS09955	0.57	+1.2
2,199,435	+		PFLU_RS09955	0.57	-0.8
2,199,463	+		PFLU_RS09955	0.61	-1.9
2,199,464	-		PFLU_RS09955	0.61	+1.4
2,199,464	-		PFLU_RS09955	0.61	+1.5
2,199,464	-		PFLU_RS09955	0.61	-0.9
2,199,464	-		PFLU_RS09955	0.61	+0.3
2,199,464	-		PFLU_RS09955	0.61	-0.8
2,199,490	-		PFLU_RS09955	0.64	-0.0
2,199,490	-		PFLU_RS09955	0.64	-0.5
2,199,506	+		PFLU_RS09955	0.67	+0.4
2,199,506	+		PFLU_RS09955	0.67	-0.4
2,199,506	+		PFLU_RS09955	0.67	-0.0
2,199,507	-		PFLU_RS09955	0.67	-0.0
2,199,507	-		PFLU_RS09955	0.67	-0.1
2,199,507	-		PFLU_RS09955	0.67	-1.8
2,199,604	+		PFLU_RS09955	0.80	-0.8
2,199,604	+		PFLU_RS09955	0.80	+1.3
2,199,604	+		PFLU_RS09955	0.80	+0.7
2,199,604	+		PFLU_RS09955	0.80	-1.2
2,199,604	+		PFLU_RS09955	0.80	-0.6
2,199,604	+		PFLU_RS09955	0.80	-0.8
2,199,604	+		PFLU_RS09955	0.80	-1.6
2,199,605	-		PFLU_RS09955	0.80	-0.2
2,199,605	-		PFLU_RS09955	0.80	-0.7
2,199,605	-		PFLU_RS09955	0.80	-0.5
2,199,605	-		PFLU_RS09955	0.80	+0.9
2,199,605	-		PFLU_RS09955	0.80	+0.3
2,199,605	-		PFLU_RS09955	0.80	-0.5
2,199,605	-		PFLU_RS09955	0.80	+0.8
2,199,605	-		PFLU_RS09955	0.80	-0.8
2,199,605	-		PFLU_RS09955	0.80	+1.7
2,199,625	+		PFLU_RS09955	0.83	-1.0
2,199,748	+				-1.3
2,199,748	+				-0.8
2,199,748	+				-0.4
2,199,748	+				-1.3
2,199,748	+				-0.8
2,199,749	-				-1.3
2,199,841	+				-0.3
2,199,841	+				+0.5
2,199,841	+				-0.2
2,199,841	+				-0.8
2,199,841	+				-0.6
2,199,841	+				+0.4
2,199,841	+				-0.0
2,199,841	+				-0.4
2,199,841	+				-1.9
2,199,841	+				-1.4
2,199,841	+				-2.0
2,199,841	+				-1.3
2,199,841	+				-1.2
2,199,841	+				-1.3
2,199,842	-				-0.5
2,199,842	-				+0.1
2,199,920	+				+1.3
2,199,921	-				-0.7
2,199,938	+				+0.4
2,199,940	+				+0.4
2,199,940	+				-1.8
2,199,940	+				-0.1
2,199,940	+				-1.0
2,199,940	+				+0.7
2,199,941	-				-0.8
2,199,941	-				+0.7
2,199,941	-				-0.4
2,199,941	-				+0.8
2,199,941	-				-1.5
2,200,040	+				+0.2
2,200,040	+				+0.7
2,200,040	+				+0.1
2,200,040	+				-1.3
2,200,041	-				+1.1
2,200,041	-				+1.1
2,200,041	-				-0.3
2,200,041	-				-0.9
2,200,041	-				+1.7
2,200,041	-				+0.4
2,200,375	+		PFLU_RS09960	0.52	-2.2
2,200,375	+		PFLU_RS09960	0.52	-0.3
2,200,375	+		PFLU_RS09960	0.52	+1.0
2,200,375	+		PFLU_RS09960	0.52	-0.5
2,200,375	+		PFLU_RS09960	0.52	-0.8
2,200,375	+		PFLU_RS09960	0.52	-1.7
2,200,375	+		PFLU_RS09960	0.52	+0.9
2,200,375	+		PFLU_RS09960	0.52	-1.8
2,200,376	-		PFLU_RS09960	0.52	+0.3
2,200,376	-		PFLU_RS09960	0.52	+1.2
2,200,376	-		PFLU_RS09960	0.52	+1.0
2,200,376	-		PFLU_RS09960	0.52	-1.6
2,200,376	-		PFLU_RS09960	0.52	-0.8
2,200,376	-		PFLU_RS09960	0.52	-0.5
2,200,376	-		PFLU_RS09960	0.52	-0.6
2,200,410	+		PFLU_RS09960	0.59	-1.3
2,200,411	-		PFLU_RS09960	0.59	-1.5
2,200,636	+				+0.2
2,200,636	+				+1.7
2,200,636	+				-1.1
2,200,636	+				-0.2
2,200,636	+				-0.4
2,200,636	+				-0.7
2,200,637	-				-1.3
2,200,637	-				-0.2
2,200,637	-				+1.5
2,200,637	-				-1.9
2,200,637	-				+0.5
2,200,637	-				+2.5
2,200,637	-				-1.0
2,200,637	-				-1.5
2,200,637	-				+0.3
2,200,657	+				+1.1
2,200,657	+				-1.0
2,200,657	+				+1.1
2,200,658	-				-0.6
2,200,658	-				+1.0
2,200,658	-				-0.0
2,200,658	-				-0.0
2,200,658	-				-1.5
2,200,658	-				+0.5
2,200,658	-				-1.0
2,200,658	-				-0.9
2,200,661	+				-0.7
2,200,661	+				+0.7
2,200,661	+				+0.4
2,200,661	+				-0.9
2,200,661	+				+1.0
2,200,661	+				-0.8
2,200,661	+				-0.5
2,200,661	+				-0.6
2,200,661	+				+0.5
2,200,661	+				-0.7
2,200,661	+				-0.3
2,200,661	+				-1.3
2,200,661	+				-0.9
2,200,662	-				+0.0
2,200,662	-				-0.1
2,200,662	-				+0.5
2,200,662	-				+0.8
2,200,662	-				+0.3
2,200,662	-				+2.0
2,200,662	-				-0.2
2,200,662	-				+0.8
2,200,662	-				-0.3
2,200,662	-				+0.6
2,200,662	-				+1.0
2,200,662	-				+1.0
2,200,664	+				-0.5
2,200,664	+				-0.2
2,200,664	+				-0.0
2,200,664	+				+0.2
2,200,664	+				-1.4
2,200,664	+				+0.4
2,200,664	+				-0.5
2,200,664	+				+0.9
2,200,664	+				-0.4
2,200,664	+				-0.8
2,200,664	+				+0.9
2,200,664	+				-0.1
2,200,664	+				+0.4
2,200,664	+				+0.6
2,200,664	+				+0.4
2,200,664	+				-1.3
2,200,664	+				+0.6
2,200,665	-				+1.9
2,200,665	-				-1.5
2,200,665	-				-0.7
2,200,665	-				-3.0
2,200,665	-				-1.0
2,200,665	-				-0.7
2,200,665	-				-1.5
2,200,665	-				-0.3
2,200,665	-				+1.0
2,200,665	-				-0.8
2,200,665	-				-1.3
2,200,665	-				+0.0
2,200,665	-				-0.3
2,200,665	-				-0.8
2,200,665	-				+0.5
2,200,665	-				-0.2
2,200,665	-				-0.5
2,200,665	-				-1.8
2,200,665	-				-0.8
2,200,665	-				+1.3
2,200,665	-				-0.5
2,200,665	-				-1.2
2,200,665	-				+0.8
2,200,665	-				-0.5
2,200,665	-				+1.5
2,200,665	-				-1.1
2,200,674	+				-2.7
2,200,704	+				-0.6
2,200,767	+		PFLU_RS09965	0.22	+0.1
2,200,768	-		PFLU_RS09965	0.23	-0.8
2,200,792	+		PFLU_RS09965	0.30	+1.0
2,200,792	+		PFLU_RS09965	0.30	+1.9
2,200,792	+		PFLU_RS09965	0.30	+0.2
2,200,792	+		PFLU_RS09965	0.30	+0.1
2,200,792	+		PFLU_RS09965	0.30	+0.2
2,200,792	+		PFLU_RS09965	0.30	+0.0
2,200,792	+		PFLU_RS09965	0.30	-0.2
2,200,792	+		PFLU_RS09965	0.30	-0.9
2,200,792	+		PFLU_RS09965	0.30	+2.1
2,200,792	+		PFLU_RS09965	0.30	-0.5
2,200,792	+		PFLU_RS09965	0.30	-0.4
2,200,792	+		PFLU_RS09965	0.30	-0.7
2,200,792	+		PFLU_RS09965	0.30	+0.7
2,200,792	+		PFLU_RS09965	0.30	+0.3
2,200,793	-		PFLU_RS09965	0.30	+0.4
2,200,793	-		PFLU_RS09965	0.30	-0.2
2,200,793	-		PFLU_RS09965	0.30	-1.0
2,200,793	-		PFLU_RS09965	0.30	+0.4
2,200,793	-		PFLU_RS09965	0.30	+2.4
2,200,793	-		PFLU_RS09965	0.30	-1.5
2,200,793	-		PFLU_RS09965	0.30	+0.4
2,200,793	-		PFLU_RS09965	0.30	-2.0
2,200,793	-		PFLU_RS09965	0.30	+0.5
2,200,793	-		PFLU_RS09965	0.30	-0.5
2,200,793	-		PFLU_RS09965	0.30	+1.8
2,200,797	+		PFLU_RS09965	0.31	-0.6
2,200,797	+		PFLU_RS09965	0.31	-0.0
2,200,798	-		PFLU_RS09965	0.31	+0.5
2,200,798	-		PFLU_RS09965	0.31	+1.5
2,200,798	-		PFLU_RS09965	0.31	+1.3
2,200,798	-		PFLU_RS09965	0.31	-2.5
2,200,798	-		PFLU_RS09965	0.31	-1.0
2,200,807	+		PFLU_RS09965	0.34	-0.7
2,200,807	+		PFLU_RS09965	0.34	-1.3
2,200,807	+		PFLU_RS09965	0.34	+0.7
2,200,807	+		PFLU_RS09965	0.34	-1.8
2,200,807	+		PFLU_RS09965	0.34	-1.3
2,200,807	+		PFLU_RS09965	0.34	+0.6
2,200,807	+		PFLU_RS09965	0.34	-1.8
2,200,807	+		PFLU_RS09965	0.34	+0.1
2,200,807	+		PFLU_RS09965	0.34	-1.1
2,200,807	+		PFLU_RS09965	0.34	-0.7
2,200,807	+		PFLU_RS09965	0.34	+1.3
2,200,807	+		PFLU_RS09965	0.34	+1.5
2,200,807	+		PFLU_RS09965	0.34	-0.7
2,200,807	+		PFLU_RS09965	0.34	-0.4
2,200,807	+		PFLU_RS09965	0.34	+2.1
2,200,807	+		PFLU_RS09965	0.34	-1.6
2,200,807	+		PFLU_RS09965	0.34	+0.6
2,200,807	+		PFLU_RS09965	0.34	+0.9
2,200,807	+		PFLU_RS09965	0.34	+0.9
2,200,808	-		PFLU_RS09965	0.34	+1.0
2,200,808	-		PFLU_RS09965	0.34	-1.1
2,200,808	-		PFLU_RS09965	0.34	-0.1
2,200,808	-		PFLU_RS09965	0.34	-0.6
2,200,808	-		PFLU_RS09965	0.34	-0.9
2,200,808	-		PFLU_RS09965	0.34	-0.5
2,200,808	-		PFLU_RS09965	0.34	-0.6
2,200,808	-		PFLU_RS09965	0.34	-1.5
2,200,808	-		PFLU_RS09965	0.34	+1.4
2,200,808	-		PFLU_RS09965	0.34	+0.5
2,200,808	-		PFLU_RS09965	0.34	+0.3
2,200,931	+		PFLU_RS09965	0.70	-2.3
2,200,931	+		PFLU_RS09965	0.70	-0.2
2,200,931	+		PFLU_RS09965	0.70	+1.2
2,200,931	+		PFLU_RS09965	0.70	+1.5
2,200,931	+		PFLU_RS09965	0.70	-0.6
2,200,932	-		PFLU_RS09965	0.70	-0.4
2,200,932	-		PFLU_RS09965	0.70	+0.8
2,200,932	-		PFLU_RS09965	0.70	-0.6
2,200,932	-		PFLU_RS09965	0.70	+2.9
2,201,036	+				-0.2
2,201,036	+				+0.4
2,201,036	+				-0.6
2,201,036	+				-0.5
2,201,036	+				-1.2
2,201,036	+				+0.4
2,201,036	+				+1.3
2,201,036	+				-0.1
2,201,037	-				-2.0
2,201,037	-				+0.5
2,201,037	-				+0.3
2,201,037	-				-0.5
2,201,037	-				-1.7
2,201,037	-				+0.0
2,201,037	-				-1.0
2,201,037	-				-0.5
2,201,040	+				+0.5
2,201,040	+				-1.8
2,201,040	+				-0.0
2,201,040	+				+0.5
2,201,040	+				-0.9
2,201,041	-				+0.7
2,201,041	-				-2.5
2,201,041	-				+0.2
2,201,041	-				+0.0
2,201,041	-				-2.3
2,201,041	-				-0.8
2,201,178	-		PFLU_RS09970	0.40	+3.7
2,201,363	+				+0.2
2,201,372	-				-2.3
2,201,441	+				+1.5
2,201,441	+				-2.0
2,201,441	+				-2.5
2,201,441	+				+0.1
2,201,534	-				-0.3
2,201,534	-				+0.2
2,201,535	+				-0.0
2,201,535	+				+1.5
2,201,535	+				-0.1
2,201,535	+				-1.3
2,201,535	+				-1.3
2,201,535	+				-1.0
2,201,535	+				+1.5
2,201,535	+				+0.5
2,201,536	-				-0.5
2,201,536	-				-0.4
2,201,536	-				+0.2
2,201,536	-				-1.5
2,201,536	-				-0.5
2,201,536	-				-0.8
2,201,536	-				+0.3
2,201,536	-				+1.5
2,201,536	-				+0.4
2,201,536	-				+0.1