Experiment: Nickel (II) chloride 0.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4300 and Psest_4301 overlap by 4 nucleotides Psest_4301 and Psest_4302 overlap by 4 nucleotides Psest_4302 and Psest_4303 are separated by 76 nucleotides
Psest_4300: Psest_4300 - PAS domain S-box, at 4,496,349 to 4,499,219
_4300
Psest_4301: Psest_4301 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,499,216 to 4,499,605
_4301
Psest_4302: Psest_4302 - hypothetical protein, at 4,499,602 to 4,500,738
_4302
Psest_4303: Psest_4303 - HEAT repeat., at 4,500,815 to 4,501,852
_4303
Position (kb)
4499
4500
4501 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4498.726 kb on + strand, within Psest_4300 at 4498.814 kb on - strand, within Psest_4300 at 4498.873 kb on + strand, within Psest_4300 at 4498.873 kb on + strand, within Psest_4300 at 4498.873 kb on + strand, within Psest_4300 at 4498.874 kb on - strand, within Psest_4300 at 4499.286 kb on - strand, within Psest_4301 at 4499.286 kb on - strand, within Psest_4301 at 4499.286 kb on - strand, within Psest_4301 at 4499.286 kb on - strand, within Psest_4301 at 4499.286 kb on - strand, within Psest_4301 at 4499.402 kb on + strand, within Psest_4301 at 4499.534 kb on + strand, within Psest_4301 at 4499.534 kb on + strand, within Psest_4301 at 4499.535 kb on - strand, within Psest_4301 at 4499.535 kb on - strand, within Psest_4301 at 4499.535 kb on - strand, within Psest_4301 at 4499.821 kb on + strand, within Psest_4302 at 4499.822 kb on - strand, within Psest_4302 at 4500.133 kb on + strand, within Psest_4302 at 4500.133 kb on + strand, within Psest_4302 at 4500.133 kb on + strand, within Psest_4302 at 4500.134 kb on - strand, within Psest_4302 at 4500.134 kb on - strand, within Psest_4302 at 4500.134 kb on - strand, within Psest_4302 at 4500.290 kb on - strand, within Psest_4302 at 4500.290 kb on - strand, within Psest_4302 at 4500.290 kb on - strand, within Psest_4302 at 4500.290 kb on - strand, within Psest_4302 at 4500.290 kb on - strand, within Psest_4302 at 4500.424 kb on + strand, within Psest_4302 at 4500.449 kb on - strand, within Psest_4302 at 4500.514 kb on + strand, within Psest_4302 at 4500.514 kb on + strand, within Psest_4302 at 4500.514 kb on + strand, within Psest_4302 at 4500.515 kb on - strand, within Psest_4302 at 4500.515 kb on - strand, within Psest_4302 at 4500.515 kb on - strand, within Psest_4302 at 4500.517 kb on + strand, within Psest_4302 at 4500.517 kb on + strand, within Psest_4302 at 4500.517 kb on + strand, within Psest_4302 at 4500.517 kb on + strand, within Psest_4302 at 4500.517 kb on + strand, within Psest_4302 at 4500.517 kb on + strand, within Psest_4302 at 4500.517 kb on + strand, within Psest_4302 at 4500.518 kb on - strand, within Psest_4302 at 4500.518 kb on - strand, within Psest_4302 at 4500.518 kb on - strand, within Psest_4302 at 4500.518 kb on - strand, within Psest_4302 at 4500.518 kb on - strand, within Psest_4302 at 4500.518 kb on - strand, within Psest_4302 at 4500.520 kb on + strand, within Psest_4302 at 4500.535 kb on + strand, within Psest_4302 at 4500.535 kb on + strand, within Psest_4302 at 4500.535 kb on + strand, within Psest_4302 at 4500.536 kb on - strand, within Psest_4302 at 4500.691 kb on + strand at 4500.691 kb on + strand at 4500.691 kb on + strand at 4500.691 kb on + strand at 4500.692 kb on - strand at 4500.692 kb on - strand at 4500.694 kb on + strand at 4500.694 kb on + strand at 4500.694 kb on + strand at 4500.833 kb on + strand at 4500.833 kb on + strand at 4500.833 kb on + strand at 4500.834 kb on - strand at 4500.834 kb on - strand at 4500.834 kb on - strand at 4500.834 kb on - strand at 4500.834 kb on - strand at 4500.858 kb on + strand at 4500.858 kb on + strand at 4500.871 kb on - strand at 4500.882 kb on + strand at 4500.882 kb on + strand at 4500.882 kb on + strand at 4500.883 kb on - strand at 4500.954 kb on - strand, within Psest_4303 at 4501.224 kb on + strand, within Psest_4303
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.9 mM remove 4,498,726 + Psest_4300 0.83 +0.8 4,498,814 - Psest_4300 0.86 -1.1 4,498,873 + Psest_4300 0.88 -1.6 4,498,873 + Psest_4300 0.88 -1.0 4,498,873 + Psest_4300 0.88 -2.8 4,498,874 - Psest_4300 0.88 +1.6 4,499,286 - Psest_4301 0.18 -2.1 4,499,286 - Psest_4301 0.18 -0.4 4,499,286 - Psest_4301 0.18 +0.5 4,499,286 - Psest_4301 0.18 -2.9 4,499,286 - Psest_4301 0.18 +0.6 4,499,402 + Psest_4301 0.48 -1.2 4,499,534 + Psest_4301 0.82 +0.4 4,499,534 + Psest_4301 0.82 +0.2 4,499,535 - Psest_4301 0.82 +1.3 4,499,535 - Psest_4301 0.82 -0.0 4,499,535 - Psest_4301 0.82 -0.3 4,499,821 + Psest_4302 0.19 -1.1 4,499,822 - Psest_4302 0.19 +0.8 4,500,133 + Psest_4302 0.47 -0.4 4,500,133 + Psest_4302 0.47 -1.2 4,500,133 + Psest_4302 0.47 +1.0 4,500,134 - Psest_4302 0.47 -2.5 4,500,134 - Psest_4302 0.47 -0.9 4,500,134 - Psest_4302 0.47 +0.8 4,500,290 - Psest_4302 0.61 +0.7 4,500,290 - Psest_4302 0.61 -0.4 4,500,290 - Psest_4302 0.61 +0.2 4,500,290 - Psest_4302 0.61 +1.6 4,500,290 - Psest_4302 0.61 -3.1 4,500,424 + Psest_4302 0.72 -1.5 4,500,449 - Psest_4302 0.74 +0.0 4,500,514 + Psest_4302 0.80 -0.0 4,500,514 + Psest_4302 0.80 -2.9 4,500,514 + Psest_4302 0.80 -0.9 4,500,515 - Psest_4302 0.80 -0.3 4,500,515 - Psest_4302 0.80 -1.1 4,500,515 - Psest_4302 0.80 -1.3 4,500,517 + Psest_4302 0.80 -1.0 4,500,517 + Psest_4302 0.80 +1.6 4,500,517 + Psest_4302 0.80 -0.1 4,500,517 + Psest_4302 0.80 -0.7 4,500,517 + Psest_4302 0.80 -2.2 4,500,517 + Psest_4302 0.80 +0.3 4,500,517 + Psest_4302 0.80 -0.2 4,500,518 - Psest_4302 0.81 -1.2 4,500,518 - Psest_4302 0.81 -1.3 4,500,518 - Psest_4302 0.81 -0.3 4,500,518 - Psest_4302 0.81 +0.2 4,500,518 - Psest_4302 0.81 -1.1 4,500,518 - Psest_4302 0.81 -0.8 4,500,520 + Psest_4302 0.81 -0.9 4,500,535 + Psest_4302 0.82 -1.6 4,500,535 + Psest_4302 0.82 -1.1 4,500,535 + Psest_4302 0.82 -1.5 4,500,536 - Psest_4302 0.82 +0.1 4,500,691 + -1.4 4,500,691 + +0.9 4,500,691 + +0.6 4,500,691 + +1.4 4,500,692 - -0.5 4,500,692 - +1.2 4,500,694 + +2.2 4,500,694 + -0.7 4,500,694 + -0.7 4,500,833 + +0.3 4,500,833 + -2.5 4,500,833 + -1.4 4,500,834 - -0.9 4,500,834 - +0.8 4,500,834 - -1.0 4,500,834 - -0.1 4,500,834 - +0.3 4,500,858 + -0.9 4,500,858 + +0.0 4,500,871 - +0.8 4,500,882 + -1.2 4,500,882 + -0.5 4,500,882 + +0.3 4,500,883 - +0.2 4,500,954 - Psest_4303 0.13 +0.7 4,501,224 + Psest_4303 0.39 +0.3
Or see this region's nucleotide sequence