Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4302

Experiment: Nickel (II) chloride 0.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4300 and Psest_4301 overlap by 4 nucleotidesPsest_4301 and Psest_4302 overlap by 4 nucleotidesPsest_4302 and Psest_4303 are separated by 76 nucleotides Psest_4300: Psest_4300 - PAS domain S-box, at 4,496,349 to 4,499,219 _4300 Psest_4301: Psest_4301 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,499,216 to 4,499,605 _4301 Psest_4302: Psest_4302 - hypothetical protein, at 4,499,602 to 4,500,738 _4302 Psest_4303: Psest_4303 - HEAT repeat., at 4,500,815 to 4,501,852 _4303 Position (kb) 4499 4500 4501Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4498.726 kb on + strand, within Psest_4300at 4498.814 kb on - strand, within Psest_4300at 4498.873 kb on + strand, within Psest_4300at 4498.873 kb on + strand, within Psest_4300at 4498.873 kb on + strand, within Psest_4300at 4498.874 kb on - strand, within Psest_4300at 4499.286 kb on - strand, within Psest_4301at 4499.286 kb on - strand, within Psest_4301at 4499.286 kb on - strand, within Psest_4301at 4499.286 kb on - strand, within Psest_4301at 4499.286 kb on - strand, within Psest_4301at 4499.402 kb on + strand, within Psest_4301at 4499.534 kb on + strand, within Psest_4301at 4499.534 kb on + strand, within Psest_4301at 4499.535 kb on - strand, within Psest_4301at 4499.535 kb on - strand, within Psest_4301at 4499.535 kb on - strand, within Psest_4301at 4499.821 kb on + strand, within Psest_4302at 4499.822 kb on - strand, within Psest_4302at 4500.133 kb on + strand, within Psest_4302at 4500.133 kb on + strand, within Psest_4302at 4500.133 kb on + strand, within Psest_4302at 4500.134 kb on - strand, within Psest_4302at 4500.134 kb on - strand, within Psest_4302at 4500.134 kb on - strand, within Psest_4302at 4500.290 kb on - strand, within Psest_4302at 4500.290 kb on - strand, within Psest_4302at 4500.290 kb on - strand, within Psest_4302at 4500.290 kb on - strand, within Psest_4302at 4500.290 kb on - strand, within Psest_4302at 4500.424 kb on + strand, within Psest_4302at 4500.449 kb on - strand, within Psest_4302at 4500.514 kb on + strand, within Psest_4302at 4500.514 kb on + strand, within Psest_4302at 4500.514 kb on + strand, within Psest_4302at 4500.515 kb on - strand, within Psest_4302at 4500.515 kb on - strand, within Psest_4302at 4500.515 kb on - strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.517 kb on + strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.518 kb on - strand, within Psest_4302at 4500.520 kb on + strand, within Psest_4302at 4500.535 kb on + strand, within Psest_4302at 4500.535 kb on + strand, within Psest_4302at 4500.535 kb on + strand, within Psest_4302at 4500.536 kb on - strand, within Psest_4302at 4500.691 kb on + strandat 4500.691 kb on + strandat 4500.691 kb on + strandat 4500.691 kb on + strandat 4500.692 kb on - strandat 4500.692 kb on - strandat 4500.694 kb on + strandat 4500.694 kb on + strandat 4500.694 kb on + strandat 4500.833 kb on + strandat 4500.833 kb on + strandat 4500.833 kb on + strandat 4500.834 kb on - strandat 4500.834 kb on - strandat 4500.834 kb on - strandat 4500.834 kb on - strandat 4500.834 kb on - strandat 4500.858 kb on + strandat 4500.858 kb on + strandat 4500.871 kb on - strandat 4500.882 kb on + strandat 4500.882 kb on + strandat 4500.882 kb on + strandat 4500.883 kb on - strandat 4500.954 kb on - strand, within Psest_4303at 4501.224 kb on + strand, within Psest_4303

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.9 mM
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4,498,726 + Psest_4300 0.83 +0.8
4,498,814 - Psest_4300 0.86 -1.1
4,498,873 + Psest_4300 0.88 -1.6
4,498,873 + Psest_4300 0.88 -1.0
4,498,873 + Psest_4300 0.88 -2.8
4,498,874 - Psest_4300 0.88 +1.6
4,499,286 - Psest_4301 0.18 -2.1
4,499,286 - Psest_4301 0.18 -0.4
4,499,286 - Psest_4301 0.18 +0.5
4,499,286 - Psest_4301 0.18 -2.9
4,499,286 - Psest_4301 0.18 +0.6
4,499,402 + Psest_4301 0.48 -1.2
4,499,534 + Psest_4301 0.82 +0.4
4,499,534 + Psest_4301 0.82 +0.2
4,499,535 - Psest_4301 0.82 +1.3
4,499,535 - Psest_4301 0.82 -0.0
4,499,535 - Psest_4301 0.82 -0.3
4,499,821 + Psest_4302 0.19 -1.1
4,499,822 - Psest_4302 0.19 +0.8
4,500,133 + Psest_4302 0.47 -0.4
4,500,133 + Psest_4302 0.47 -1.2
4,500,133 + Psest_4302 0.47 +1.0
4,500,134 - Psest_4302 0.47 -2.5
4,500,134 - Psest_4302 0.47 -0.9
4,500,134 - Psest_4302 0.47 +0.8
4,500,290 - Psest_4302 0.61 +0.7
4,500,290 - Psest_4302 0.61 -0.4
4,500,290 - Psest_4302 0.61 +0.2
4,500,290 - Psest_4302 0.61 +1.6
4,500,290 - Psest_4302 0.61 -3.1
4,500,424 + Psest_4302 0.72 -1.5
4,500,449 - Psest_4302 0.74 +0.0
4,500,514 + Psest_4302 0.80 -0.0
4,500,514 + Psest_4302 0.80 -2.9
4,500,514 + Psest_4302 0.80 -0.9
4,500,515 - Psest_4302 0.80 -0.3
4,500,515 - Psest_4302 0.80 -1.1
4,500,515 - Psest_4302 0.80 -1.3
4,500,517 + Psest_4302 0.80 -1.0
4,500,517 + Psest_4302 0.80 +1.6
4,500,517 + Psest_4302 0.80 -0.1
4,500,517 + Psest_4302 0.80 -0.7
4,500,517 + Psest_4302 0.80 -2.2
4,500,517 + Psest_4302 0.80 +0.3
4,500,517 + Psest_4302 0.80 -0.2
4,500,518 - Psest_4302 0.81 -1.2
4,500,518 - Psest_4302 0.81 -1.3
4,500,518 - Psest_4302 0.81 -0.3
4,500,518 - Psest_4302 0.81 +0.2
4,500,518 - Psest_4302 0.81 -1.1
4,500,518 - Psest_4302 0.81 -0.8
4,500,520 + Psest_4302 0.81 -0.9
4,500,535 + Psest_4302 0.82 -1.6
4,500,535 + Psest_4302 0.82 -1.1
4,500,535 + Psest_4302 0.82 -1.5
4,500,536 - Psest_4302 0.82 +0.1
4,500,691 + -1.4
4,500,691 + +0.9
4,500,691 + +0.6
4,500,691 + +1.4
4,500,692 - -0.5
4,500,692 - +1.2
4,500,694 + +2.2
4,500,694 + -0.7
4,500,694 + -0.7
4,500,833 + +0.3
4,500,833 + -2.5
4,500,833 + -1.4
4,500,834 - -0.9
4,500,834 - +0.8
4,500,834 - -1.0
4,500,834 - -0.1
4,500,834 - +0.3
4,500,858 + -0.9
4,500,858 + +0.0
4,500,871 - +0.8
4,500,882 + -1.2
4,500,882 + -0.5
4,500,882 + +0.3
4,500,883 - +0.2
4,500,954 - Psest_4303 0.13 +0.7
4,501,224 + Psest_4303 0.39 +0.3

Or see this region's nucleotide sequence