Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1317

Experiment: Nickel (II) chloride 0.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1316 and Psest_1317 are separated by 84 nucleotidesPsest_1317 and Psest_1318 overlap by 4 nucleotidesPsest_1318 and Psest_1319 overlap by 7 nucleotides Psest_1316: Psest_1316 - Predicted transmembrane sensor domain, at 1,416,625 to 1,417,983 _1316 Psest_1317: Psest_1317 - phosphonate ABC transporter, permease protein PhnE, at 1,418,068 to 1,418,835 _1317 Psest_1318: Psest_1318 - ABC-type phosphate/phosphonate transport system, permease component, at 1,418,832 to 1,419,665 _1318 Psest_1319: Psest_1319 - ABC-type phosphate/phosphonate transport system, ATPase component, at 1,419,659 to 1,420,489 _1319 Position (kb) 1418 1419Strain fitness (log2 ratio) -2 -1 0 1 2at 1417.138 kb on + strand, within Psest_1316at 1417.219 kb on - strand, within Psest_1316at 1417.424 kb on + strand, within Psest_1316at 1417.424 kb on + strand, within Psest_1316at 1417.424 kb on + strand, within Psest_1316at 1417.425 kb on - strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.436 kb on - strand, within Psest_1316at 1417.436 kb on - strand, within Psest_1316at 1417.466 kb on + strand, within Psest_1316at 1417.466 kb on + strand, within Psest_1316at 1417.589 kb on + strand, within Psest_1316at 1417.590 kb on - strand, within Psest_1316at 1417.590 kb on - strand, within Psest_1316at 1417.590 kb on - strand, within Psest_1316at 1417.644 kb on + strand, within Psest_1316at 1417.676 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.716 kb on - strand, within Psest_1316at 1417.723 kb on + strand, within Psest_1316at 1417.723 kb on + strand, within Psest_1316at 1417.724 kb on - strand, within Psest_1316at 1417.724 kb on - strand, within Psest_1316at 1417.724 kb on - strand, within Psest_1316at 1417.754 kb on + strand, within Psest_1316at 1417.754 kb on + strand, within Psest_1316at 1417.844 kb on + strand, within Psest_1316at 1417.956 kb on + strandat 1417.957 kb on - strandat 1418.189 kb on + strand, within Psest_1317at 1418.189 kb on + strand, within Psest_1317at 1418.189 kb on + strandat 1418.189 kb on + strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.265 kb on - strand, within Psest_1317at 1418.265 kb on - strand, within Psest_1317at 1418.274 kb on - strand, within Psest_1317at 1419.031 kb on + strand, within Psest_1318at 1419.031 kb on + strand, within Psest_1318at 1419.064 kb on - strand, within Psest_1318at 1419.154 kb on + strand, within Psest_1318at 1419.179 kb on - strand, within Psest_1318at 1419.459 kb on + strand, within Psest_1318at 1419.459 kb on + strand, within Psest_1318at 1419.459 kb on + strand, within Psest_1318at 1419.735 kb on + strandat 1419.735 kb on + strandat 1419.736 kb on - strandat 1419.736 kb on - strandat 1419.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.9 mM
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1,417,138 + Psest_1316 0.38 +0.1
1,417,219 - Psest_1316 0.44 -0.2
1,417,424 + Psest_1316 0.59 +0.3
1,417,424 + Psest_1316 0.59 -0.2
1,417,424 + Psest_1316 0.59 +0.2
1,417,425 - Psest_1316 0.59 -0.8
1,417,433 + Psest_1316 0.59 +0.1
1,417,433 + Psest_1316 0.59 -0.2
1,417,433 + Psest_1316 0.59 -1.2
1,417,433 + Psest_1316 0.59 +2.1
1,417,434 - Psest_1316 0.60 +0.3
1,417,434 - Psest_1316 0.60 +0.8
1,417,434 - Psest_1316 0.60 -0.3
1,417,434 - Psest_1316 0.60 -0.3
1,417,434 - Psest_1316 0.60 +0.7
1,417,434 - Psest_1316 0.60 -0.5
1,417,436 - Psest_1316 0.60 +0.1
1,417,436 - Psest_1316 0.60 -1.1
1,417,466 + Psest_1316 0.62 -2.1
1,417,466 + Psest_1316 0.62 +1.0
1,417,589 + Psest_1316 0.71 +1.7
1,417,590 - Psest_1316 0.71 -0.3
1,417,590 - Psest_1316 0.71 +0.0
1,417,590 - Psest_1316 0.71 +1.3
1,417,644 + Psest_1316 0.75 -0.7
1,417,676 + Psest_1316 0.77 -0.7
1,417,682 + Psest_1316 0.78 +0.8
1,417,682 + Psest_1316 0.78 -1.4
1,417,682 + Psest_1316 0.78 -1.1
1,417,682 + Psest_1316 0.78 +0.3
1,417,682 + Psest_1316 0.78 -1.2
1,417,682 + Psest_1316 0.78 -1.3
1,417,683 - Psest_1316 0.78 +1.2
1,417,683 - Psest_1316 0.78 -2.2
1,417,683 - Psest_1316 0.78 -0.6
1,417,683 - Psest_1316 0.78 +1.3
1,417,683 - Psest_1316 0.78 -1.0
1,417,683 - Psest_1316 0.78 -0.0
1,417,683 - Psest_1316 0.78 -0.3
1,417,683 - Psest_1316 0.78 +1.9
1,417,716 - Psest_1316 0.80 +0.1
1,417,723 + Psest_1316 0.81 -0.7
1,417,723 + Psest_1316 0.81 +0.6
1,417,724 - Psest_1316 0.81 -0.1
1,417,724 - Psest_1316 0.81 -0.8
1,417,724 - Psest_1316 0.81 -0.3
1,417,754 + Psest_1316 0.83 +0.2
1,417,754 + Psest_1316 0.83 +1.4
1,417,844 + Psest_1316 0.90 -0.1
1,417,956 + -0.8
1,417,957 - +0.7
1,418,189 + Psest_1317 0.16 -1.3
1,418,189 + Psest_1317 0.16 -0.3
1,418,189 + -1.8
1,418,189 + Psest_1317 0.16 -1.2
1,418,190 - Psest_1317 0.16 -0.3
1,418,190 - Psest_1317 0.16 +0.3
1,418,190 - Psest_1317 0.16 +0.7
1,418,190 - Psest_1317 0.16 -1.1
1,418,190 - Psest_1317 0.16 -2.0
1,418,190 - Psest_1317 0.16 +0.3
1,418,265 - Psest_1317 0.26 -1.9
1,418,265 - Psest_1317 0.26 -0.5
1,418,274 - Psest_1317 0.27 -0.3
1,419,031 + Psest_1318 0.24 -0.5
1,419,031 + Psest_1318 0.24 +1.8
1,419,064 - Psest_1318 0.28 +0.2
1,419,154 + Psest_1318 0.39 -0.2
1,419,179 - Psest_1318 0.42 -0.2
1,419,459 + Psest_1318 0.75 +0.1
1,419,459 + Psest_1318 0.75 -2.5
1,419,459 + Psest_1318 0.75 -0.2
1,419,735 + -0.9
1,419,735 + -0.8
1,419,736 - -2.0
1,419,736 - +0.4
1,419,736 - +0.8

Or see this region's nucleotide sequence