Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2445

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2444 and Psest_2445 are separated by 120 nucleotidesPsest_2445 and Psest_2446 are separated by 10 nucleotides Psest_2444: Psest_2444 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 2,612,120 to 2,613,754 _2444 Psest_2445: Psest_2445 - 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data), at 2,613,875 to 2,615,014 _2445 Psest_2446: Psest_2446 - acetyl-CoA acetyltransferases, at 2,615,025 to 2,616,209 _2446 Position (kb) 2613 2614 2615 2616Strain fitness (log2 ratio) -2 -1 0 1 2at 2612.919 kb on + strand, within Psest_2444at 2612.919 kb on + strand, within Psest_2444at 2612.919 kb on + strand, within Psest_2444at 2612.919 kb on + strand, within Psest_2444at 2612.919 kb on + strand, within Psest_2444at 2612.920 kb on - strand, within Psest_2444at 2612.920 kb on - strand, within Psest_2444at 2612.920 kb on - strand, within Psest_2444at 2612.920 kb on - strand, within Psest_2444at 2612.920 kb on - strand, within Psest_2444at 2612.920 kb on - strand, within Psest_2444at 2612.920 kb on - strand, within Psest_2444at 2612.920 kb on - strand, within Psest_2444at 2612.920 kb on - strand, within Psest_2444at 2612.920 kb on - strand, within Psest_2444at 2613.175 kb on - strand, within Psest_2444at 2613.175 kb on - strand, within Psest_2444at 2613.213 kb on + strand, within Psest_2444at 2613.213 kb on + strand, within Psest_2444at 2613.213 kb on + strand, within Psest_2444at 2613.438 kb on + strand, within Psest_2444at 2613.438 kb on + strand, within Psest_2444at 2613.628 kb on - strandat 2613.628 kb on - strandat 2613.761 kb on + strandat 2613.762 kb on - strandat 2613.762 kb on - strandat 2613.767 kb on + strandat 2613.768 kb on - strandat 2613.768 kb on - strandat 2613.768 kb on - strandat 2613.768 kb on - strandat 2613.768 kb on - strandat 2613.768 kb on - strandat 2613.779 kb on - strandat 2613.779 kb on - strandat 2613.779 kb on - strandat 2613.834 kb on + strandat 2613.834 kb on + strandat 2613.834 kb on + strandat 2613.834 kb on + strandat 2613.835 kb on - strandat 2613.835 kb on - strandat 2613.936 kb on + strandat 2613.936 kb on + strandat 2613.937 kb on - strandat 2613.937 kb on - strandat 2613.994 kb on - strand, within Psest_2445at 2614.540 kb on + strand, within Psest_2445at 2614.549 kb on + strand, within Psest_2445at 2614.550 kb on - strand, within Psest_2445at 2614.578 kb on + strand, within Psest_2445at 2614.578 kb on + strand, within Psest_2445at 2614.578 kb on + strand, within Psest_2445at 2614.579 kb on - strand, within Psest_2445at 2614.579 kb on - strand, within Psest_2445at 2614.815 kb on + strand, within Psest_2445at 2614.815 kb on + strand, within Psest_2445at 2614.816 kb on - strand, within Psest_2445at 2615.749 kb on + strand, within Psest_2446at 2615.836 kb on + strand, within Psest_2446at 2615.837 kb on - strand, within Psest_2446at 2615.837 kb on - strand, within Psest_2446

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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2,612,919 + Psest_2444 0.49 -2.1
2,612,919 + Psest_2444 0.49 +0.1
2,612,919 + Psest_2444 0.49 -1.2
2,612,919 + Psest_2444 0.49 +0.2
2,612,919 + Psest_2444 0.49 +1.4
2,612,920 - Psest_2444 0.49 +2.3
2,612,920 - Psest_2444 0.49 +0.5
2,612,920 - Psest_2444 0.49 -1.3
2,612,920 - Psest_2444 0.49 -0.1
2,612,920 - Psest_2444 0.49 +1.8
2,612,920 - Psest_2444 0.49 +0.1
2,612,920 - Psest_2444 0.49 +0.1
2,612,920 - Psest_2444 0.49 -0.7
2,612,920 - Psest_2444 0.49 -1.2
2,612,920 - Psest_2444 0.49 +1.7
2,613,175 - Psest_2444 0.65 -0.2
2,613,175 - Psest_2444 0.65 +0.1
2,613,213 + Psest_2444 0.67 +0.4
2,613,213 + Psest_2444 0.67 -0.1
2,613,213 + Psest_2444 0.67 -1.0
2,613,438 + Psest_2444 0.81 +0.9
2,613,438 + Psest_2444 0.81 +0.9
2,613,628 - +0.3
2,613,628 - +0.1
2,613,761 + +0.0
2,613,762 - -2.1
2,613,762 - +1.3
2,613,767 + -0.1
2,613,768 - -1.6
2,613,768 - +0.3
2,613,768 - +0.6
2,613,768 - -0.2
2,613,768 - +2.2
2,613,768 - +0.9
2,613,779 - +0.2
2,613,779 - -0.6
2,613,779 - -1.1
2,613,834 + -0.6
2,613,834 + -2.4
2,613,834 + +0.2
2,613,834 + +0.4
2,613,835 - +2.2
2,613,835 - -0.9
2,613,936 + -1.3
2,613,936 + -0.1
2,613,937 - -0.1
2,613,937 - +0.6
2,613,994 - Psest_2445 0.10 -0.5
2,614,540 + Psest_2445 0.58 -0.1
2,614,549 + Psest_2445 0.59 -0.4
2,614,550 - Psest_2445 0.59 -0.2
2,614,578 + Psest_2445 0.62 +1.0
2,614,578 + Psest_2445 0.62 -0.5
2,614,578 + Psest_2445 0.62 -1.9
2,614,579 - Psest_2445 0.62 +0.1
2,614,579 - Psest_2445 0.62 -1.7
2,614,815 + Psest_2445 0.82 -0.7
2,614,815 + Psest_2445 0.82 -0.9
2,614,816 - Psest_2445 0.83 -0.4
2,615,749 + Psest_2446 0.61 +2.0
2,615,836 + Psest_2446 0.68 +0.3
2,615,837 - Psest_2446 0.69 +0.8
2,615,837 - Psest_2446 0.69 +0.2

Or see this region's nucleotide sequence