Experiment: Pseudomonas syringae pv. syringae B728a MLX with Paraburkholderia sabiae T6SS mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0843 and Psyr_0844 overlap by 1 nucleotides Psyr_0844 and Psyr_0845 are separated by 11 nucleotides Psyr_0845 and Psyr_0846 are separated by 397 nucleotides
Psyr_0843: Psyr_0843 - TPR repeat protein, at 956,274 to 957,017
_0843
Psyr_0844: Psyr_0844 - Protein of unknown function DUF446, at 957,017 to 957,346
_0844
Psyr_0845: Psyr_0845 - conserved hypothetical protein, at 957,358 to 957,774
_0845
Psyr_0846: Psyr_0846 - acetolactate synthase, large subunit, at 958,172 to 959,896
_0846
Position (kb) 957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 956.482 kb on + strand, within Psyr_0843 at 956.482 kb on + strand, within Psyr_0843 at 956.483 kb on - strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.526 kb on + strand, within Psyr_0843 at 956.527 kb on - strand, within Psyr_0843 at 956.527 kb on - strand, within Psyr_0843 at 956.527 kb on - strand, within Psyr_0843 at 956.527 kb on - strand, within Psyr_0843 at 956.631 kb on + strand, within Psyr_0843 at 956.631 kb on + strand, within Psyr_0843 at 956.631 kb on + strand, within Psyr_0843 at 956.631 kb on + strand, within Psyr_0843 at 956.631 kb on + strand, within Psyr_0843 at 956.632 kb on - strand, within Psyr_0843 at 956.632 kb on - strand, within Psyr_0843 at 956.632 kb on - strand, within Psyr_0843 at 956.632 kb on - strand, within Psyr_0843 at 956.632 kb on - strand, within Psyr_0843 at 956.829 kb on + strand, within Psyr_0843 at 956.905 kb on - strand, within Psyr_0843 at 956.905 kb on - strand, within Psyr_0843 at 956.905 kb on - strand, within Psyr_0843 at 956.905 kb on - strand, within Psyr_0843 at 956.905 kb on - strand, within Psyr_0843 at 957.030 kb on + strand at 957.031 kb on - strand at 957.031 kb on - strand at 957.060 kb on + strand, within Psyr_0844 at 957.060 kb on + strand, within Psyr_0844 at 957.061 kb on - strand, within Psyr_0844 at 957.061 kb on - strand, within Psyr_0844 at 957.266 kb on + strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.360 kb on - strand at 957.369 kb on - strand at 957.369 kb on - strand at 957.710 kb on + strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.809 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.924 kb on + strand at 957.924 kb on + strand at 957.956 kb on - strand at 957.956 kb on - strand at 957.987 kb on + strand at 958.004 kb on + strand at 958.052 kb on + strand at 958.052 kb on + strand at 958.053 kb on - strand at 958.053 kb on - strand at 958.075 kb on + strand at 958.075 kb on + strand at 958.113 kb on - strand at 958.113 kb on - strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.121 kb on + strand at 958.121 kb on + strand at 958.121 kb on + strand at 958.158 kb on + strand at 958.182 kb on + strand at 958.182 kb on + strand at 958.182 kb on + strand at 958.183 kb on - strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.271 kb on + strand at 958.272 kb on - strand at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.486 kb on + strand, within Psyr_0846 at 958.610 kb on + strand, within Psyr_0846 at 958.610 kb on + strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.692 kb on - strand, within Psyr_0846
Per-strain Table
Position Strand Gene LocusTag Fraction Pseudomonas syringae pv. syringae B728a MLX with Paraburkholderia sabiae T6SS mutant remove 956,482 + Psyr_0843 0.28 -1.7 956,482 + Psyr_0843 0.28 +0.3 956,483 - Psyr_0843 0.28 +0.2 956,526 + Psyr_0843 0.34 +0.4 956,526 + Psyr_0843 0.34 +0.4 956,526 + Psyr_0843 0.34 +1.6 956,526 + Psyr_0843 0.34 +0.1 956,526 + Psyr_0843 0.34 +0.7 956,526 + Psyr_0843 0.34 -0.5 956,527 - Psyr_0843 0.34 +0.7 956,527 - Psyr_0843 0.34 -0.7 956,527 - Psyr_0843 0.34 +0.1 956,527 - Psyr_0843 0.34 -2.0 956,631 + Psyr_0843 0.48 +0.5 956,631 + Psyr_0843 0.48 +1.2 956,631 + Psyr_0843 0.48 +0.5 956,631 + Psyr_0843 0.48 +0.2 956,631 + Psyr_0843 0.48 +1.3 956,632 - Psyr_0843 0.48 +0.3 956,632 - Psyr_0843 0.48 -0.3 956,632 - Psyr_0843 0.48 +0.0 956,632 - Psyr_0843 0.48 -0.2 956,632 - Psyr_0843 0.48 -0.3 956,829 + Psyr_0843 0.75 +1.3 956,905 - Psyr_0843 0.85 -0.4 956,905 - Psyr_0843 0.85 +0.3 956,905 - Psyr_0843 0.85 -2.0 956,905 - Psyr_0843 0.85 +0.2 956,905 - Psyr_0843 0.85 -1.1 957,030 + +1.3 957,031 - +0.4 957,031 - -0.4 957,060 + Psyr_0844 0.13 -0.2 957,060 + Psyr_0844 0.13 -0.2 957,061 - Psyr_0844 0.13 -0.0 957,061 - Psyr_0844 0.13 +1.5 957,266 + Psyr_0844 0.75 -0.8 957,267 - Psyr_0844 0.76 -1.0 957,267 - Psyr_0844 0.76 +0.4 957,267 - Psyr_0844 0.76 -1.2 957,267 - Psyr_0844 0.76 -0.5 957,360 - -0.8 957,369 - -1.3 957,369 - -2.4 957,710 + Psyr_0845 0.84 -0.4 957,711 - Psyr_0845 0.85 -0.2 957,711 - Psyr_0845 0.85 -1.8 957,711 - Psyr_0845 0.85 -1.0 957,809 + +0.9 957,814 + +0.2 957,814 + +2.5 957,814 + -0.2 957,814 + +0.4 957,814 + +0.1 957,814 + -0.2 957,814 + +1.0 957,924 + -0.9 957,924 + +0.4 957,956 - +1.6 957,956 - -0.2 957,987 + +1.0 958,004 + +0.0 958,052 + +0.7 958,052 + -1.6 958,053 - +0.4 958,053 - -0.4 958,075 + -1.3 958,075 + +0.7 958,113 - -0.7 958,113 - -3.2 958,118 + +0.2 958,118 + -0.4 958,118 + +0.7 958,118 + +0.4 958,118 + -3.3 958,119 - +0.8 958,119 - +0.6 958,119 - -0.2 958,119 - +0.9 958,119 - -0.2 958,121 + +0.5 958,121 + +0.4 958,121 + -0.1 958,158 + +0.2 958,182 + +1.2 958,182 + -1.0 958,182 + +0.3 958,183 - -2.4 958,234 + -1.2 958,234 + -1.3 958,234 + -2.7 958,234 + -2.4 958,234 + +0.4 958,234 + -2.9 958,234 + -2.0 958,234 + +2.5 958,234 + -0.8 958,235 - -1.8 958,235 - -3.0 958,235 - -0.7 958,235 - +0.8 958,235 - +1.2 958,235 - +0.9 958,235 - -0.9 958,235 - +0.4 958,238 + +0.8 958,238 + -0.3 958,238 + -1.5 958,238 + -0.2 958,238 + -0.5 958,238 + -1.2 958,238 + -0.3 958,238 + -0.9 958,238 + +0.3 958,239 - +0.2 958,239 - +0.6 958,239 - +0.5 958,239 - -0.4 958,239 - -1.3 958,239 - +0.5 958,239 - -1.8 958,239 - -0.5 958,239 - +0.6 958,239 - -0.8 958,239 - +2.4 958,239 - +0.4 958,271 + +0.9 958,272 - +0.0 958,439 + Psyr_0846 0.15 +0.2 958,439 + Psyr_0846 0.15 -0.6 958,439 + Psyr_0846 0.15 -1.0 958,439 + Psyr_0846 0.15 -0.8 958,439 + Psyr_0846 0.15 -0.3 958,440 - Psyr_0846 0.16 +0.2 958,440 - Psyr_0846 0.16 -1.1 958,440 - Psyr_0846 0.16 -1.4 958,440 - Psyr_0846 0.16 -0.4 958,486 + Psyr_0846 0.18 -0.0 958,610 + Psyr_0846 0.25 +0.6 958,610 + Psyr_0846 0.25 -1.8 958,611 - Psyr_0846 0.25 +0.3 958,611 - Psyr_0846 0.25 +0.8 958,611 - Psyr_0846 0.25 -0.1 958,611 - Psyr_0846 0.25 -0.1 958,611 - Psyr_0846 0.25 -1.8 958,691 + Psyr_0846 0.30 +0.6 958,691 + Psyr_0846 0.30 +0.2 958,691 + Psyr_0846 0.30 +0.2 958,692 - Psyr_0846 0.30 +0.1
Or see this region's nucleotide sequence