Experiment: Pseudomonas syringae pv. syringae B728a MLX with Paraburkholderia sabiae T6SS mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0691 and Psyr_0692 are separated by 67 nucleotides Psyr_0692 and Psyr_0693 overlap by 4 nucleotides Psyr_0693 and Psyr_0694 overlap by 7 nucleotides
Psyr_0691: Psyr_0691 - gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03, at 795,237 to 796,964
_0691
Psyr_0692: Psyr_0692 - Binding-protein-dependent transport systems inner membrane component, at 797,032 to 797,799
_0692
Psyr_0693: Psyr_0693 - Binding-protein-dependent transport systems inner membrane component, at 797,796 to 798,623
_0693
Psyr_0694: Psyr_0694 - ABC transporter, at 798,617 to 799,414
_0694
Position (kb) 797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 796.160 kb on + strand, within Psyr_0691 at 796.160 kb on + strand, within Psyr_0691 at 796.167 kb on + strand, within Psyr_0691 at 796.168 kb on - strand, within Psyr_0691 at 796.194 kb on + strand, within Psyr_0691 at 796.194 kb on + strand, within Psyr_0691 at 796.213 kb on - strand, within Psyr_0691 at 796.213 kb on - strand, within Psyr_0691 at 796.269 kb on + strand, within Psyr_0691 at 796.269 kb on + strand, within Psyr_0691 at 796.269 kb on + strand, within Psyr_0691 at 796.269 kb on + strand, within Psyr_0691 at 796.269 kb on + strand, within Psyr_0691 at 796.270 kb on - strand, within Psyr_0691 at 796.270 kb on - strand, within Psyr_0691 at 796.270 kb on - strand, within Psyr_0691 at 796.270 kb on - strand, within Psyr_0691 at 796.270 kb on - strand, within Psyr_0691 at 796.270 kb on - strand, within Psyr_0691 at 796.361 kb on + strand, within Psyr_0691 at 796.361 kb on + strand, within Psyr_0691 at 796.362 kb on - strand, within Psyr_0691 at 796.413 kb on + strand, within Psyr_0691 at 796.413 kb on + strand, within Psyr_0691 at 796.413 kb on + strand, within Psyr_0691 at 796.413 kb on + strand, within Psyr_0691 at 796.413 kb on + strand, within Psyr_0691 at 796.413 kb on + strand, within Psyr_0691 at 796.414 kb on - strand, within Psyr_0691 at 796.521 kb on + strand, within Psyr_0691 at 796.521 kb on + strand, within Psyr_0691 at 796.521 kb on + strand, within Psyr_0691 at 796.521 kb on + strand, within Psyr_0691 at 796.522 kb on - strand, within Psyr_0691 at 796.522 kb on - strand, within Psyr_0691 at 796.522 kb on - strand, within Psyr_0691 at 796.522 kb on - strand, within Psyr_0691 at 796.693 kb on - strand, within Psyr_0691 at 796.770 kb on - strand, within Psyr_0691 at 796.915 kb on - strand at 796.915 kb on - strand at 797.037 kb on + strand at 797.038 kb on - strand at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.153 kb on + strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.154 kb on - strand, within Psyr_0692 at 797.235 kb on + strand, within Psyr_0692 at 797.235 kb on + strand, within Psyr_0692 at 797.235 kb on + strand, within Psyr_0692 at 797.236 kb on - strand, within Psyr_0692 at 797.236 kb on - strand, within Psyr_0692 at 797.236 kb on - strand, within Psyr_0692 at 797.238 kb on - strand, within Psyr_0692 at 797.238 kb on - strand, within Psyr_0692 at 797.238 kb on - strand, within Psyr_0692 at 797.277 kb on - strand, within Psyr_0692 at 797.277 kb on - strand, within Psyr_0692 at 797.733 kb on - strand at 797.733 kb on - strand at 797.733 kb on - strand at 797.733 kb on - strand at 797.733 kb on - strand at 797.995 kb on + strand, within Psyr_0693 at 797.995 kb on + strand, within Psyr_0693 at 797.995 kb on + strand, within Psyr_0693 at 797.995 kb on + strand, within Psyr_0693 at 797.996 kb on - strand, within Psyr_0693 at 797.996 kb on - strand, within Psyr_0693 at 797.996 kb on - strand, within Psyr_0693 at 798.118 kb on + strand, within Psyr_0693 at 798.119 kb on - strand, within Psyr_0693 at 798.119 kb on - strand, within Psyr_0693 at 798.119 kb on - strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.142 kb on + strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.143 kb on - strand, within Psyr_0693 at 798.375 kb on + strand, within Psyr_0693 at 798.376 kb on - strand, within Psyr_0693 at 798.510 kb on + strand, within Psyr_0693 at 798.687 kb on + strand at 798.687 kb on + strand at 798.687 kb on + strand at 798.688 kb on - strand at 798.688 kb on - strand at 798.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pseudomonas syringae pv. syringae B728a MLX with Paraburkholderia sabiae T6SS mutant remove 796,160 + Psyr_0691 0.53 +0.1 796,160 + Psyr_0691 0.53 +0.5 796,167 + Psyr_0691 0.54 -1.1 796,168 - Psyr_0691 0.54 -0.7 796,194 + Psyr_0691 0.55 -1.5 796,194 + Psyr_0691 0.55 -0.3 796,213 - Psyr_0691 0.56 +0.5 796,213 - Psyr_0691 0.56 +2.5 796,269 + Psyr_0691 0.60 +0.1 796,269 + Psyr_0691 0.60 -2.6 796,269 + Psyr_0691 0.60 +0.6 796,269 + Psyr_0691 0.60 +1.1 796,269 + Psyr_0691 0.60 +0.5 796,270 - Psyr_0691 0.60 +1.2 796,270 - Psyr_0691 0.60 -1.7 796,270 - Psyr_0691 0.60 +0.1 796,270 - Psyr_0691 0.60 +0.2 796,270 - Psyr_0691 0.60 +1.4 796,270 - Psyr_0691 0.60 -1.8 796,361 + Psyr_0691 0.65 +1.0 796,361 + Psyr_0691 0.65 -0.4 796,362 - Psyr_0691 0.65 -0.8 796,413 + Psyr_0691 0.68 -0.2 796,413 + Psyr_0691 0.68 -1.0 796,413 + Psyr_0691 0.68 -0.3 796,413 + Psyr_0691 0.68 +0.7 796,413 + Psyr_0691 0.68 +0.4 796,413 + Psyr_0691 0.68 -0.3 796,414 - Psyr_0691 0.68 +1.1 796,521 + Psyr_0691 0.74 +0.1 796,521 + Psyr_0691 0.74 -0.4 796,521 + Psyr_0691 0.74 -1.8 796,521 + Psyr_0691 0.74 -0.0 796,522 - Psyr_0691 0.74 +0.2 796,522 - Psyr_0691 0.74 +0.3 796,522 - Psyr_0691 0.74 -0.3 796,522 - Psyr_0691 0.74 -0.1 796,693 - Psyr_0691 0.84 -2.1 796,770 - Psyr_0691 0.89 +0.7 796,915 - -0.5 796,915 - +0.5 797,037 + +0.2 797,038 - +0.8 797,153 + Psyr_0692 0.16 -0.0 797,153 + Psyr_0692 0.16 +0.6 797,153 + Psyr_0692 0.16 +0.4 797,153 + Psyr_0692 0.16 -2.2 797,153 + Psyr_0692 0.16 -1.6 797,153 + Psyr_0692 0.16 -0.2 797,153 + Psyr_0692 0.16 -0.7 797,153 + Psyr_0692 0.16 +1.3 797,153 + Psyr_0692 0.16 -0.1 797,153 + Psyr_0692 0.16 -1.0 797,153 + Psyr_0692 0.16 +0.1 797,153 + Psyr_0692 0.16 -0.7 797,154 - Psyr_0692 0.16 +0.7 797,154 - Psyr_0692 0.16 -3.4 797,154 - Psyr_0692 0.16 +0.2 797,154 - Psyr_0692 0.16 +0.7 797,154 - Psyr_0692 0.16 +1.7 797,154 - Psyr_0692 0.16 -1.0 797,154 - Psyr_0692 0.16 +0.5 797,154 - Psyr_0692 0.16 -0.2 797,154 - Psyr_0692 0.16 +2.1 797,154 - Psyr_0692 0.16 +0.4 797,154 - Psyr_0692 0.16 -0.5 797,235 + Psyr_0692 0.26 +0.6 797,235 + Psyr_0692 0.26 +1.1 797,235 + Psyr_0692 0.26 -1.2 797,236 - Psyr_0692 0.27 -2.0 797,236 - Psyr_0692 0.27 +0.2 797,236 - Psyr_0692 0.27 -0.8 797,238 - Psyr_0692 0.27 -0.2 797,238 - Psyr_0692 0.27 +0.7 797,238 - Psyr_0692 0.27 -0.4 797,277 - Psyr_0692 0.32 -1.6 797,277 - Psyr_0692 0.32 -1.0 797,733 - +0.4 797,733 - -1.4 797,733 - -0.1 797,733 - -0.6 797,733 - +0.3 797,995 + Psyr_0693 0.24 -0.3 797,995 + Psyr_0693 0.24 -0.0 797,995 + Psyr_0693 0.24 -1.1 797,995 + Psyr_0693 0.24 +0.3 797,996 - Psyr_0693 0.24 -0.5 797,996 - Psyr_0693 0.24 +1.4 797,996 - Psyr_0693 0.24 +0.5 798,118 + Psyr_0693 0.39 -0.4 798,119 - Psyr_0693 0.39 +0.4 798,119 - Psyr_0693 0.39 -0.2 798,119 - Psyr_0693 0.39 +0.9 798,142 + Psyr_0693 0.42 -0.9 798,142 + Psyr_0693 0.42 -0.0 798,142 + Psyr_0693 0.42 -0.0 798,142 + Psyr_0693 0.42 +0.6 798,142 + Psyr_0693 0.42 -2.0 798,142 + Psyr_0693 0.42 +0.4 798,142 + Psyr_0693 0.42 -0.1 798,142 + Psyr_0693 0.42 +1.9 798,142 + Psyr_0693 0.42 +0.1 798,143 - Psyr_0693 0.42 -0.6 798,143 - Psyr_0693 0.42 +0.9 798,143 - Psyr_0693 0.42 -0.3 798,143 - Psyr_0693 0.42 +0.9 798,143 - Psyr_0693 0.42 +0.7 798,143 - Psyr_0693 0.42 -1.6 798,143 - Psyr_0693 0.42 -1.1 798,375 + Psyr_0693 0.70 +0.8 798,376 - Psyr_0693 0.70 +0.7 798,510 + Psyr_0693 0.86 +0.1 798,687 + -2.4 798,687 + -1.4 798,687 + -2.9 798,688 - -2.0 798,688 - -0.5 798,688 - +0.1
Or see this region's nucleotide sequence