Experiment: Pseudomonas syringae pv. syringae B728a MLX with Paraburkholderia sabiae T6SS mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0558 and Psyr_0559 are separated by 255 nucleotides Psyr_0559 and Psyr_0560 are separated by 45 nucleotides
Psyr_0558: Psyr_0558 - conserved hypothetical protein, at 632,329 to 634,113
_0558
Psyr_0559: Psyr_0559 - thiosulfate sulfurtransferase, at 634,369 to 636,201
_0559
Psyr_0560: Psyr_0560 - conserved hypothetical protein, at 636,247 to 637,782
_0560
Position (kb) 634
635
636
637 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 633.506 kb on + strand, within Psyr_0558 at 633.506 kb on + strand, within Psyr_0558 at 633.506 kb on + strand, within Psyr_0558 at 633.506 kb on + strand, within Psyr_0558 at 633.506 kb on + strand, within Psyr_0558 at 633.506 kb on + strand, within Psyr_0558 at 633.506 kb on + strand, within Psyr_0558 at 633.506 kb on + strand, within Psyr_0558 at 633.506 kb on + strand, within Psyr_0558 at 633.506 kb on + strand, within Psyr_0558 at 633.506 kb on + strand, within Psyr_0558 at 633.507 kb on - strand, within Psyr_0558 at 633.507 kb on - strand, within Psyr_0558 at 633.507 kb on - strand, within Psyr_0558 at 633.507 kb on - strand, within Psyr_0558 at 633.507 kb on - strand, within Psyr_0558 at 633.507 kb on - strand, within Psyr_0558 at 633.507 kb on - strand, within Psyr_0558 at 633.571 kb on + strand, within Psyr_0558 at 633.571 kb on + strand, within Psyr_0558 at 633.571 kb on + strand, within Psyr_0558 at 633.571 kb on + strand, within Psyr_0558 at 633.572 kb on - strand, within Psyr_0558 at 633.641 kb on + strand, within Psyr_0558 at 633.641 kb on + strand, within Psyr_0558 at 633.642 kb on - strand, within Psyr_0558 at 633.642 kb on - strand, within Psyr_0558 at 633.642 kb on - strand, within Psyr_0558 at 633.642 kb on - strand, within Psyr_0558 at 633.765 kb on - strand, within Psyr_0558 at 633.765 kb on - strand, within Psyr_0558 at 633.881 kb on + strand, within Psyr_0558 at 633.881 kb on + strand, within Psyr_0558 at 633.881 kb on + strand, within Psyr_0558 at 633.881 kb on + strand, within Psyr_0558 at 633.881 kb on + strand, within Psyr_0558 at 633.881 kb on + strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.882 kb on - strand, within Psyr_0558 at 633.965 kb on + strand at 634.087 kb on + strand at 634.088 kb on - strand at 634.160 kb on + strand at 634.161 kb on - strand at 634.202 kb on + strand at 634.202 kb on + strand at 634.202 kb on + strand at 634.202 kb on + strand at 634.202 kb on + strand at 634.203 kb on - strand at 634.223 kb on + strand at 634.223 kb on + strand at 634.224 kb on - strand at 634.224 kb on - strand at 634.224 kb on - strand at 634.228 kb on + strand at 634.229 kb on - strand at 634.229 kb on - strand at 634.264 kb on + strand at 634.264 kb on + strand at 634.264 kb on + strand at 634.265 kb on - strand at 634.265 kb on - strand at 634.265 kb on - strand at 634.327 kb on + strand at 635.262 kb on - strand, within Psyr_0559 at 635.262 kb on - strand, within Psyr_0559 at 635.262 kb on - strand, within Psyr_0559 at 635.262 kb on - strand, within Psyr_0559 at 635.442 kb on - strand, within Psyr_0559 at 635.442 kb on - strand, within Psyr_0559 at 635.484 kb on - strand, within Psyr_0559 at 635.484 kb on - strand, within Psyr_0559 at 635.484 kb on - strand, within Psyr_0559 at 635.484 kb on - strand, within Psyr_0559 at 635.484 kb on - strand, within Psyr_0559 at 635.745 kb on - strand, within Psyr_0559 at 635.745 kb on - strand, within Psyr_0559 at 635.745 kb on - strand, within Psyr_0559 at 635.761 kb on - strand, within Psyr_0559 at 635.868 kb on - strand, within Psyr_0559 at 635.952 kb on - strand, within Psyr_0559 at 635.952 kb on - strand, within Psyr_0559 at 635.952 kb on - strand, within Psyr_0559 at 635.952 kb on - strand, within Psyr_0559 at 635.952 kb on - strand, within Psyr_0559 at 636.049 kb on - strand at 636.049 kb on - strand at 636.049 kb on - strand at 636.096 kb on - strand at 636.236 kb on + strand at 636.237 kb on - strand at 636.237 kb on - strand at 636.264 kb on + strand at 636.265 kb on - strand at 636.265 kb on - strand at 636.265 kb on - strand at 636.265 kb on - strand at 636.265 kb on - strand at 636.288 kb on + strand at 636.288 kb on + strand at 636.288 kb on + strand at 636.288 kb on + strand at 636.288 kb on + strand at 636.288 kb on + strand at 636.288 kb on + strand at 636.289 kb on - strand at 636.289 kb on - strand at 636.289 kb on - strand at 636.289 kb on - strand at 636.289 kb on - strand at 636.289 kb on - strand at 636.289 kb on - strand at 636.289 kb on - strand at 636.484 kb on + strand, within Psyr_0560 at 636.485 kb on - strand, within Psyr_0560 at 636.485 kb on - strand, within Psyr_0560 at 636.485 kb on - strand, within Psyr_0560 at 636.787 kb on + strand, within Psyr_0560 at 636.788 kb on - strand, within Psyr_0560 at 636.895 kb on + strand, within Psyr_0560 at 636.895 kb on + strand, within Psyr_0560 at 636.895 kb on + strand, within Psyr_0560 at 636.895 kb on + strand, within Psyr_0560 at 636.895 kb on + strand, within Psyr_0560 at 636.896 kb on - strand, within Psyr_0560 at 636.896 kb on - strand, within Psyr_0560 at 636.896 kb on - strand, within Psyr_0560 at 636.896 kb on - strand, within Psyr_0560 at 636.896 kb on - strand, within Psyr_0560 at 636.921 kb on - strand, within Psyr_0560 at 636.921 kb on - strand, within Psyr_0560 at 636.921 kb on - strand, within Psyr_0560 at 637.146 kb on + strand, within Psyr_0560 at 637.147 kb on - strand, within Psyr_0560
Per-strain Table
Position Strand Gene LocusTag Fraction Pseudomonas syringae pv. syringae B728a MLX with Paraburkholderia sabiae T6SS mutant remove 633,506 + Psyr_0558 0.66 +1.4 633,506 + Psyr_0558 0.66 +0.1 633,506 + Psyr_0558 0.66 -1.1 633,506 + Psyr_0558 0.66 -0.6 633,506 + Psyr_0558 0.66 -2.0 633,506 + Psyr_0558 0.66 +0.4 633,506 + Psyr_0558 0.66 -0.4 633,506 + Psyr_0558 0.66 -0.2 633,506 + Psyr_0558 0.66 -0.7 633,506 + Psyr_0558 0.66 -1.0 633,506 + Psyr_0558 0.66 +0.5 633,507 - Psyr_0558 0.66 +1.0 633,507 - Psyr_0558 0.66 +0.5 633,507 - Psyr_0558 0.66 +0.1 633,507 - Psyr_0558 0.66 +1.1 633,507 - Psyr_0558 0.66 +0.2 633,507 - Psyr_0558 0.66 +0.7 633,507 - Psyr_0558 0.66 +0.8 633,571 + Psyr_0558 0.70 -1.1 633,571 + Psyr_0558 0.70 +1.7 633,571 + Psyr_0558 0.70 -0.1 633,571 + Psyr_0558 0.70 +0.6 633,572 - Psyr_0558 0.70 -1.5 633,641 + Psyr_0558 0.74 +0.3 633,641 + Psyr_0558 0.74 -0.2 633,642 - Psyr_0558 0.74 -1.0 633,642 - Psyr_0558 0.74 +0.8 633,642 - Psyr_0558 0.74 -0.3 633,642 - Psyr_0558 0.74 +0.9 633,765 - Psyr_0558 0.80 +0.5 633,765 - Psyr_0558 0.80 -0.7 633,881 + Psyr_0558 0.87 +0.9 633,881 + Psyr_0558 0.87 +0.1 633,881 + Psyr_0558 0.87 +1.3 633,881 + Psyr_0558 0.87 +2.2 633,881 + Psyr_0558 0.87 -0.1 633,881 + Psyr_0558 0.87 +0.1 633,882 - Psyr_0558 0.87 -0.3 633,882 - Psyr_0558 0.87 -1.8 633,882 - Psyr_0558 0.87 -0.1 633,882 - Psyr_0558 0.87 +0.0 633,882 - Psyr_0558 0.87 +1.2 633,882 - Psyr_0558 0.87 -0.3 633,882 - Psyr_0558 0.87 +1.2 633,882 - Psyr_0558 0.87 -0.1 633,882 - Psyr_0558 0.87 +0.3 633,882 - Psyr_0558 0.87 +0.6 633,882 - Psyr_0558 0.87 +0.5 633,882 - Psyr_0558 0.87 -1.0 633,882 - Psyr_0558 0.87 -2.2 633,965 + +1.5 634,087 + +0.7 634,088 - +0.3 634,160 + -0.1 634,161 - +0.4 634,202 + +1.1 634,202 + +1.0 634,202 + +0.3 634,202 + -1.2 634,202 + +0.4 634,203 - +1.3 634,223 + +0.3 634,223 + +0.4 634,224 - +0.9 634,224 - -0.4 634,224 - +0.3 634,228 + -1.6 634,229 - +0.6 634,229 - -0.9 634,264 + -1.3 634,264 + +0.4 634,264 + -2.1 634,265 - +0.1 634,265 - -0.2 634,265 - +0.4 634,327 + +0.1 635,262 - Psyr_0559 0.49 -0.2 635,262 - Psyr_0559 0.49 -0.8 635,262 - Psyr_0559 0.49 +0.2 635,262 - Psyr_0559 0.49 -0.4 635,442 - Psyr_0559 0.59 -0.6 635,442 - Psyr_0559 0.59 -1.4 635,484 - Psyr_0559 0.61 -2.0 635,484 - Psyr_0559 0.61 +0.4 635,484 - Psyr_0559 0.61 -0.3 635,484 - Psyr_0559 0.61 -1.5 635,484 - Psyr_0559 0.61 -1.5 635,745 - Psyr_0559 0.75 -0.1 635,745 - Psyr_0559 0.75 -2.6 635,745 - Psyr_0559 0.75 +1.5 635,761 - Psyr_0559 0.76 -1.3 635,868 - Psyr_0559 0.82 -0.9 635,952 - Psyr_0559 0.86 -0.4 635,952 - Psyr_0559 0.86 +0.6 635,952 - Psyr_0559 0.86 -0.3 635,952 - Psyr_0559 0.86 -3.9 635,952 - Psyr_0559 0.86 -0.7 636,049 - -0.4 636,049 - -0.7 636,049 - -0.3 636,096 - -0.6 636,236 + -0.5 636,237 - -0.1 636,237 - +1.0 636,264 + +0.2 636,265 - +0.6 636,265 - -0.0 636,265 - +0.1 636,265 - +0.6 636,265 - +1.9 636,288 + -0.3 636,288 + -0.2 636,288 + -0.5 636,288 + -0.8 636,288 + -1.3 636,288 + +0.6 636,288 + -0.8 636,289 - -0.7 636,289 - -2.0 636,289 - -0.4 636,289 - -0.9 636,289 - -0.9 636,289 - +0.1 636,289 - +0.1 636,289 - +0.4 636,484 + Psyr_0560 0.15 -0.0 636,485 - Psyr_0560 0.15 +0.0 636,485 - Psyr_0560 0.15 -0.7 636,485 - Psyr_0560 0.15 -1.5 636,787 + Psyr_0560 0.35 -0.9 636,788 - Psyr_0560 0.35 +0.6 636,895 + Psyr_0560 0.42 +0.5 636,895 + Psyr_0560 0.42 +0.6 636,895 + Psyr_0560 0.42 -1.3 636,895 + Psyr_0560 0.42 -0.0 636,895 + Psyr_0560 0.42 +0.5 636,896 - Psyr_0560 0.42 -0.7 636,896 - Psyr_0560 0.42 +0.5 636,896 - Psyr_0560 0.42 +0.1 636,896 - Psyr_0560 0.42 -1.2 636,896 - Psyr_0560 0.42 +0.1 636,921 - Psyr_0560 0.44 -0.5 636,921 - Psyr_0560 0.44 +0.2 636,921 - Psyr_0560 0.44 -0.3 637,146 + Psyr_0560 0.59 +1.6 637,147 - Psyr_0560 0.59 +1.6
Or see this region's nucleotide sequence