Experiment: Pseudomonas syringae pv. syringae B728a MLX with Paraburkholderia sabiae T6SS mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0443 and Psyr_0444 are separated by 1 nucleotides Psyr_0444 and Psyr_0445 overlap by 8 nucleotides Psyr_0445 and Psyr_0446 overlap by 4 nucleotides Psyr_0446 and Psyr_0447 overlap by 7 nucleotides
Psyr_0443: Psyr_0443 - Triphosphoribosyl-dephospho-CoA synthase, at 481,289 to 482,164
_0443
Psyr_0444: Psyr_0444 - Malonate decarboxylase delta subunit, at 482,166 to 482,465
_0444
Psyr_0445: Psyr_0445 - malonate decarboxylase, beta subunit, at 482,458 to 483,309
_0445
Psyr_0446: Psyr_0446 - Malonate decarboxylase gamma subunit, at 483,306 to 484,106
_0446
Psyr_0447: Psyr_0447 - malonate decarboxylase subunit, putative, at 484,100 to 484,741
_0447
Position (kb) 482
483
484 Strain fitness (log2 ratio) -1
0
1 at 481.600 kb on + strand, within Psyr_0443 at 481.600 kb on + strand, within Psyr_0443 at 481.601 kb on - strand, within Psyr_0443 at 481.601 kb on - strand, within Psyr_0443 at 481.601 kb on - strand, within Psyr_0443 at 481.603 kb on + strand, within Psyr_0443 at 481.604 kb on - strand, within Psyr_0443 at 481.604 kb on - strand, within Psyr_0443 at 481.853 kb on - strand, within Psyr_0443 at 481.853 kb on - strand, within Psyr_0443 at 481.916 kb on - strand, within Psyr_0443 at 481.998 kb on - strand, within Psyr_0443 at 482.423 kb on + strand, within Psyr_0444 at 482.971 kb on + strand, within Psyr_0445 at 482.971 kb on + strand, within Psyr_0445 at 482.972 kb on - strand, within Psyr_0445 at 483.049 kb on + strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.289 kb on + strand at 483.290 kb on - strand at 483.886 kb on - strand at 483.901 kb on - strand, within Psyr_0446 at 484.012 kb on + strand, within Psyr_0446 at 484.012 kb on + strand, within Psyr_0446 at 484.012 kb on + strand, within Psyr_0446 at 484.012 kb on + strand, within Psyr_0446 at 484.013 kb on - strand, within Psyr_0446 at 484.013 kb on - strand, within Psyr_0446 at 484.298 kb on + strand, within Psyr_0447 at 484.298 kb on + strand, within Psyr_0447 at 484.309 kb on + strand, within Psyr_0447
Per-strain Table
Position Strand Gene LocusTag Fraction Pseudomonas syringae pv. syringae B728a MLX with Paraburkholderia sabiae T6SS mutant remove 481,600 + Psyr_0443 0.36 +0.2 481,600 + Psyr_0443 0.36 -0.5 481,601 - Psyr_0443 0.36 +0.5 481,601 - Psyr_0443 0.36 +0.1 481,601 - Psyr_0443 0.36 -0.0 481,603 + Psyr_0443 0.36 -0.7 481,604 - Psyr_0443 0.36 -0.9 481,604 - Psyr_0443 0.36 +0.9 481,853 - Psyr_0443 0.64 -1.2 481,853 - Psyr_0443 0.64 -0.2 481,916 - Psyr_0443 0.72 +0.6 481,998 - Psyr_0443 0.81 -0.6 482,423 + Psyr_0444 0.86 -0.7 482,971 + Psyr_0445 0.60 -0.3 482,971 + Psyr_0445 0.60 -1.6 482,972 - Psyr_0445 0.60 -1.4 483,049 + Psyr_0445 0.69 -0.3 483,050 - Psyr_0445 0.69 -0.6 483,050 - Psyr_0445 0.69 -0.9 483,050 - Psyr_0445 0.69 -1.7 483,289 + +1.2 483,290 - +1.0 483,886 - +1.0 483,901 - Psyr_0446 0.74 +0.9 484,012 + Psyr_0446 0.88 +0.3 484,012 + Psyr_0446 0.88 -0.7 484,012 + Psyr_0446 0.88 +0.4 484,012 + Psyr_0446 0.88 +0.3 484,013 - Psyr_0446 0.88 -0.6 484,013 - Psyr_0446 0.88 -0.6 484,298 + Psyr_0447 0.31 +0.1 484,298 + Psyr_0447 0.31 -0.7 484,309 + Psyr_0447 0.33 +0.1
Or see this region's nucleotide sequence