Experiment: Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS02105 and RALBFv3_RS02110 are separated by 76 nucleotides RALBFv3_RS02110 and RALBFv3_RS02115 are separated by 159 nucleotides
RALBFv3_RS02105: RALBFv3_RS02105 - GNAT family N-acetyltransferase, at 469,044 to 469,880
_RS02105
RALBFv3_RS02110: RALBFv3_RS02110 - exopolyphosphatase, at 469,957 to 471,495
_RS02110
RALBFv3_RS02115: RALBFv3_RS02115 - polyphosphate kinase 1, at 471,655 to 473,832
_RS02115
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -1
0
1
2
3 at 469.228 kb on - strand, within RALBFv3_RS02105 at 469.404 kb on + strand, within RALBFv3_RS02105 at 469.665 kb on + strand, within RALBFv3_RS02105 at 469.666 kb on - strand, within RALBFv3_RS02105 at 469.964 kb on + strand at 469.965 kb on - strand at 470.330 kb on + strand, within RALBFv3_RS02110 at 470.927 kb on + strand, within RALBFv3_RS02110 at 470.984 kb on + strand, within RALBFv3_RS02110 at 470.985 kb on - strand, within RALBFv3_RS02110 at 471.011 kb on + strand, within RALBFv3_RS02110 at 471.012 kb on - strand, within RALBFv3_RS02110 at 471.107 kb on + strand, within RALBFv3_RS02110 at 471.213 kb on + strand, within RALBFv3_RS02110 at 471.214 kb on - strand, within RALBFv3_RS02110 at 471.321 kb on + strand, within RALBFv3_RS02110 at 471.321 kb on + strand, within RALBFv3_RS02110 at 471.322 kb on - strand, within RALBFv3_RS02110 at 471.330 kb on + strand, within RALBFv3_RS02110 at 471.331 kb on - strand, within RALBFv3_RS02110 at 471.556 kb on - strand at 471.564 kb on - strand at 471.565 kb on - strand at 471.616 kb on - strand at 471.651 kb on + strand at 471.651 kb on + strand at 471.651 kb on + strand at 471.652 kb on - strand at 471.652 kb on - strand at 471.940 kb on + strand, within RALBFv3_RS02115 at 471.940 kb on + strand, within RALBFv3_RS02115 at 471.940 kb on + strand, within RALBFv3_RS02115 at 471.941 kb on - strand, within RALBFv3_RS02115 at 471.941 kb on - strand, within RALBFv3_RS02115 at 472.467 kb on + strand, within RALBFv3_RS02115 at 472.467 kb on + strand, within RALBFv3_RS02115
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 469,228 - RALBFv3_RS02105 0.22 +0.1 469,404 + RALBFv3_RS02105 0.43 +0.2 469,665 + RALBFv3_RS02105 0.74 -0.0 469,666 - RALBFv3_RS02105 0.74 +1.5 469,964 + -0.3 469,965 - +2.8 470,330 + RALBFv3_RS02110 0.24 +0.0 470,927 + RALBFv3_RS02110 0.63 +1.8 470,984 + RALBFv3_RS02110 0.67 -0.3 470,985 - RALBFv3_RS02110 0.67 +0.1 471,011 + RALBFv3_RS02110 0.68 -0.8 471,012 - RALBFv3_RS02110 0.69 -0.2 471,107 + RALBFv3_RS02110 0.75 +0.5 471,213 + RALBFv3_RS02110 0.82 -1.1 471,214 - RALBFv3_RS02110 0.82 -0.0 471,321 + RALBFv3_RS02110 0.89 -1.2 471,321 + RALBFv3_RS02110 0.89 +1.3 471,322 - RALBFv3_RS02110 0.89 -0.7 471,330 + RALBFv3_RS02110 0.89 -0.0 471,331 - RALBFv3_RS02110 0.89 -0.5 471,556 - +1.2 471,564 - -0.6 471,565 - +2.9 471,616 - +0.1 471,651 + +1.6 471,651 + +1.2 471,651 + -0.4 471,652 - +0.9 471,652 - -1.1 471,940 + RALBFv3_RS02115 0.13 -0.4 471,940 + RALBFv3_RS02115 0.13 -1.6 471,940 + RALBFv3_RS02115 0.13 -0.6 471,941 - RALBFv3_RS02115 0.13 -1.3 471,941 - RALBFv3_RS02115 0.13 -1.2 472,467 + RALBFv3_RS02115 0.37 -1.3 472,467 + RALBFv3_RS02115 0.37 +0.3
Or see this region's nucleotide sequence