Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02990

Experiment: SMSA no antibiotic control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02975 and RALBFv3_RS02980 are separated by 167 nucleotidesRALBFv3_RS02980 and RALBFv3_RS02985 are separated by 181 nucleotidesRALBFv3_RS02985 and RALBFv3_RS02990 are separated by 64 nucleotidesRALBFv3_RS02990 and RALBFv3_RS02995 are separated by 100 nucleotides RALBFv3_RS02975: RALBFv3_RS02975 - NADH-quinone oxidoreductase subunit A, at 655,142 to 655,501 _RS02975 RALBFv3_RS02980: RALBFv3_RS02980 - tRNA-Leu, at 655,669 to 655,753 _RS02980 RALBFv3_RS02985: RALBFv3_RS02985 - preprotein translocase subunit SecG, at 655,935 to 656,285 _RS02985 RALBFv3_RS02990: RALBFv3_RS02990 - triose-phosphate isomerase, at 656,350 to 657,096 _RS02990 RALBFv3_RS02995: RALBFv3_RS02995 - NAD(P)H-quinone oxidoreductase, at 657,197 to 658,201 _RS02995 Position (kb) 656 657 658Strain fitness (log2 ratio) -1 0 1at 657.198 kb on + strandat 657.198 kb on + strandat 657.519 kb on + strand, within RALBFv3_RS02995at 657.535 kb on + strand, within RALBFv3_RS02995at 657.819 kb on + strand, within RALBFv3_RS02995at 657.820 kb on - strand, within RALBFv3_RS02995

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA no antibiotic control
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657,198 + -0.2
657,198 + -0.1
657,519 + RALBFv3_RS02995 0.32 -0.2
657,535 + RALBFv3_RS02995 0.34 -0.6
657,819 + RALBFv3_RS02995 0.62 -0.6
657,820 - RALBFv3_RS02995 0.62 +0.3

Or see this region's nucleotide sequence