Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03840 and RS_RS03845 are separated by 16 nucleotides RS_RS03845 and RS_RS03850 are separated by 219 nucleotides RS_RS03850 and RS_RS03855 are separated by 28 nucleotides
RS_RS03840: RS_RS03840 - DUF3079 domain-containing protein, at 805,347 to 805,553
_RS03840
RS_RS03845: RS_RS03845 - flavin reductase, at 805,570 to 806,145
_RS03845
RS_RS03850: RS_RS03850 - peptide-methionine (S)-S-oxide reductase, at 806,365 to 806,925
_RS03850
RS_RS03855: RS_RS03855 - DUF72 domain-containing protein, at 806,954 to 808,021
_RS03855
Position (kb) 806
807 Strain fitness (log2 ratio) -1
0
1 at 805.410 kb on + strand, within RS_RS03840 at 805.410 kb on + strand, within RS_RS03840 at 805.410 kb on + strand, within RS_RS03840 at 805.410 kb on + strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.411 kb on - strand, within RS_RS03840 at 805.704 kb on - strand, within RS_RS03845 at 805.865 kb on + strand, within RS_RS03845 at 805.865 kb on + strand, within RS_RS03845 at 805.866 kb on - strand, within RS_RS03845 at 806.503 kb on + strand, within RS_RS03850 at 806.504 kb on - strand, within RS_RS03850 at 806.659 kb on + strand, within RS_RS03850 at 806.827 kb on + strand, within RS_RS03850 at 806.854 kb on + strand, within RS_RS03850 at 806.854 kb on + strand, within RS_RS03850 at 806.855 kb on - strand, within RS_RS03850 at 806.855 kb on - strand, within RS_RS03850 at 806.855 kb on - strand, within RS_RS03850 at 807.292 kb on - strand, within RS_RS03855 at 807.675 kb on + strand, within RS_RS03855 at 807.685 kb on - strand, within RS_RS03855 at 807.708 kb on + strand, within RS_RS03855 at 807.708 kb on + strand, within RS_RS03855 at 807.708 kb on + strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.831 kb on + strand, within RS_RS03855
Per-strain Table
Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet remove 805,410 + RS_RS03840 0.30 +0.3 805,410 + RS_RS03840 0.30 -0.6 805,410 + RS_RS03840 0.30 +0.1 805,410 + RS_RS03840 0.30 -0.5 805,411 - RS_RS03840 0.31 -0.4 805,411 - RS_RS03840 0.31 -0.0 805,411 - RS_RS03840 0.31 +1.6 805,411 - RS_RS03840 0.31 -0.1 805,411 - RS_RS03840 0.31 -1.5 805,411 - RS_RS03840 0.31 +0.5 805,411 - RS_RS03840 0.31 -1.0 805,411 - RS_RS03840 0.31 +0.9 805,704 - RS_RS03845 0.23 -1.2 805,865 + RS_RS03845 0.51 -0.2 805,865 + RS_RS03845 0.51 +0.1 805,866 - RS_RS03845 0.51 -0.9 806,503 + RS_RS03850 0.25 -0.4 806,504 - RS_RS03850 0.25 +0.7 806,659 + RS_RS03850 0.52 -0.6 806,827 + RS_RS03850 0.82 +1.1 806,854 + RS_RS03850 0.87 +0.0 806,854 + RS_RS03850 0.87 -0.2 806,855 - RS_RS03850 0.87 -0.3 806,855 - RS_RS03850 0.87 +0.1 806,855 - RS_RS03850 0.87 -0.2 807,292 - RS_RS03855 0.32 +1.6 807,675 + RS_RS03855 0.68 -0.3 807,685 - RS_RS03855 0.68 +0.6 807,708 + RS_RS03855 0.71 +0.6 807,708 + RS_RS03855 0.71 -0.0 807,708 + RS_RS03855 0.71 -0.1 807,709 - RS_RS03855 0.71 +0.6 807,709 - RS_RS03855 0.71 +0.3 807,709 - RS_RS03855 0.71 +0.6 807,709 - RS_RS03855 0.71 +0.2 807,831 + RS_RS03855 0.82 +0.1
Or see this region's nucleotide sequence