Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03160

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03155 and RS_RS03160 are separated by 64 nucleotidesRS_RS03160 and RS_RS03165 are separated by 212 nucleotidesRS_RS03165 and RS_RS03170 are separated by 80 nucleotides RS_RS03155: RS_RS03155 - lipoprotein, at 676,243 to 677,253 _RS03155 RS_RS03160: RS_RS03160 - cytochrome c, at 677,318 to 677,596 _RS03160 RS_RS03165: RS_RS03165 - hypothetical protein, at 677,809 to 678,165 _RS03165 RS_RS03170: RS_RS03170 - hypothetical protein, at 678,246 to 678,974 _RS03170 Position (kb) 677 678Strain fitness (log2 ratio) -1 0 1at 676.388 kb on + strand, within RS_RS03155at 676.388 kb on + strand, within RS_RS03155at 676.486 kb on + strand, within RS_RS03155at 676.698 kb on + strand, within RS_RS03155at 676.717 kb on + strand, within RS_RS03155at 676.718 kb on - strand, within RS_RS03155at 677.276 kb on + strandat 677.285 kb on + strandat 677.285 kb on + strandat 677.286 kb on - strandat 677.432 kb on + strand, within RS_RS03160at 677.631 kb on + strandat 677.631 kb on + strandat 677.632 kb on - strandat 677.923 kb on + strand, within RS_RS03165at 678.016 kb on + strand, within RS_RS03165at 678.016 kb on + strand, within RS_RS03165at 678.017 kb on - strand, within RS_RS03165at 678.039 kb on - strand, within RS_RS03165at 678.136 kb on - strandat 678.146 kb on + strandat 678.147 kb on - strandat 678.147 kb on - strandat 678.163 kb on + strandat 678.163 kb on + strandat 678.228 kb on + strandat 678.228 kb on + strandat 678.319 kb on + strand, within RS_RS03170at 678.320 kb on - strand, within RS_RS03170at 678.320 kb on - strand, within RS_RS03170

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
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676,388 + RS_RS03155 0.14 -0.5
676,388 + RS_RS03155 0.14 -0.2
676,486 + RS_RS03155 0.24 +0.2
676,698 + RS_RS03155 0.45 +1.7
676,717 + RS_RS03155 0.47 +0.2
676,718 - RS_RS03155 0.47 +0.1
677,276 + +0.2
677,285 + +0.2
677,285 + -1.1
677,286 - +1.7
677,432 + RS_RS03160 0.41 -1.3
677,631 + -0.1
677,631 + -0.2
677,632 - +0.4
677,923 + RS_RS03165 0.32 +0.7
678,016 + RS_RS03165 0.58 +1.7
678,016 + RS_RS03165 0.58 -0.5
678,017 - RS_RS03165 0.58 -0.0
678,039 - RS_RS03165 0.64 -0.1
678,136 - +0.1
678,146 + -0.0
678,147 - -0.3
678,147 - -0.7
678,163 + -0.5
678,163 + -0.5
678,228 + -0.1
678,228 + -0.3
678,319 + RS_RS03170 0.10 +0.5
678,320 - RS_RS03170 0.10 -0.3
678,320 - RS_RS03170 0.10 +0.1

Or see this region's nucleotide sequence