Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS16970

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS16960 and RS_RS16965 are separated by 179 nucleotidesRS_RS16965 and RS_RS16970 are separated by 36 nucleotidesRS_RS16970 and RS_RS16975 are separated by 912 nucleotides RS_RS16960: RS_RS16960 - sensor histidine kinase KdpD, at 3,646,636 to 3,649,449 _RS16960 RS_RS16965: RS_RS16965 - metal ABC transporter substrate-binding protein, at 3,649,629 to 3,650,375 _RS16965 RS_RS16970: RS_RS16970 - MetQ/NlpA family lipoprotein, at 3,650,412 to 3,651,218 _RS16970 RS_RS16975: RS_RS16975 - diguanylate cyclase, at 3,652,131 to 3,653,342 _RS16975 Position (kb) 3650 3651 3652Strain fitness (log2 ratio) -2 -1 0 1at 3649.513 kb on - strandat 3651.227 kb on + strandat 3651.267 kb on - strandat 3651.332 kb on + strandat 3651.387 kb on + strandat 3651.388 kb on - strandat 3651.388 kb on - strandat 3651.393 kb on - strandat 3651.432 kb on + strandat 3651.555 kb on + strandat 3651.569 kb on - strandat 3652.098 kb on + strandat 3652.098 kb on + strandat 3652.157 kb on - strandat 3652.187 kb on + strandat 3652.188 kb on - strandat 3652.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
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3,649,513 - -0.7
3,651,227 + +1.2
3,651,267 - +0.5
3,651,332 + +0.6
3,651,387 + -0.4
3,651,388 - -1.1
3,651,388 - -1.3
3,651,393 - +0.0
3,651,432 + +0.9
3,651,555 + -0.9
3,651,569 - +0.4
3,652,098 + -0.4
3,652,098 + -2.1
3,652,157 - -0.3
3,652,187 + +0.3
3,652,188 - -0.9
3,652,188 - -0.2

Or see this region's nucleotide sequence