Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02930 and RS_RS02935 are separated by 186 nucleotides RS_RS02935 and RS_RS02940 are separated by 19 nucleotides
RS_RS02930: RS_RS02930 - MFS transporter, at 629,062 to 630,240
_RS02930
RS_RS02935: RS_RS02935 - hypothetical protein, at 630,427 to 630,774
_RS02935
RS_RS02940: RS_RS02940 - hypothetical protein, at 630,794 to 631,654
_RS02940
Position (kb) 630
631 Strain fitness (log2 ratio) -1
0
1 at 629.759 kb on - strand, within RS_RS02930 at 629.759 kb on - strand, within RS_RS02930 at 629.759 kb on - strand, within RS_RS02930 at 629.776 kb on + strand, within RS_RS02930 at 629.776 kb on + strand, within RS_RS02930 at 629.776 kb on + strand, within RS_RS02930 at 629.777 kb on - strand, within RS_RS02930 at 629.777 kb on - strand, within RS_RS02930 at 629.778 kb on + strand, within RS_RS02930 at 629.778 kb on + strand, within RS_RS02930 at 629.778 kb on + strand, within RS_RS02930 at 629.778 kb on + strand, within RS_RS02930 at 629.895 kb on + strand, within RS_RS02930 at 630.100 kb on + strand, within RS_RS02930 at 630.101 kb on - strand, within RS_RS02930 at 630.101 kb on - strand, within RS_RS02930 at 630.300 kb on + strand at 630.433 kb on + strand at 630.434 kb on - strand at 630.449 kb on + strand at 630.566 kb on - strand, within RS_RS02935 at 630.641 kb on - strand, within RS_RS02935 at 630.728 kb on - strand, within RS_RS02935 at 630.772 kb on + strand at 631.078 kb on + strand, within RS_RS02940 at 631.078 kb on + strand, within RS_RS02940 at 631.079 kb on - strand, within RS_RS02940 at 631.079 kb on - strand, within RS_RS02940 at 631.079 kb on - strand, within RS_RS02940 at 631.082 kb on + strand, within RS_RS02940 at 631.083 kb on - strand, within RS_RS02940 at 631.269 kb on - strand, within RS_RS02940 at 631.317 kb on - strand, within RS_RS02940 at 631.481 kb on - strand, within RS_RS02940 at 631.565 kb on + strand, within RS_RS02940
Per-strain Table
Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet remove 629,759 - RS_RS02930 0.59 +0.5 629,759 - RS_RS02930 0.59 -0.5 629,759 - RS_RS02930 0.59 +0.3 629,776 + RS_RS02930 0.61 -0.7 629,776 + RS_RS02930 0.61 -0.1 629,776 + RS_RS02930 0.61 -1.0 629,777 - RS_RS02930 0.61 +0.4 629,777 - RS_RS02930 0.61 -0.2 629,778 + RS_RS02930 0.61 +0.2 629,778 + RS_RS02930 0.61 +0.1 629,778 + RS_RS02930 0.61 +0.2 629,778 + RS_RS02930 0.61 +1.4 629,895 + RS_RS02930 0.71 -0.4 630,100 + RS_RS02930 0.88 +0.1 630,101 - RS_RS02930 0.88 +1.6 630,101 - RS_RS02930 0.88 -0.3 630,300 + -0.0 630,433 + -0.6 630,434 - -0.2 630,449 + -0.2 630,566 - RS_RS02935 0.40 +0.2 630,641 - RS_RS02935 0.61 +0.3 630,728 - RS_RS02935 0.86 +0.1 630,772 + -0.4 631,078 + RS_RS02940 0.33 -0.0 631,078 + RS_RS02940 0.33 -0.2 631,079 - RS_RS02940 0.33 -0.0 631,079 - RS_RS02940 0.33 -0.0 631,079 - RS_RS02940 0.33 -0.4 631,082 + RS_RS02940 0.33 -0.6 631,083 - RS_RS02940 0.34 -0.2 631,269 - RS_RS02940 0.55 -0.7 631,317 - RS_RS02940 0.61 -0.2 631,481 - RS_RS02940 0.80 -0.1 631,565 + RS_RS02940 0.90 -0.3
Or see this region's nucleotide sequence