Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS04630

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS04615 and RS_RS04620 are separated by 1 nucleotidesRS_RS04620 and RS_RS04625 are separated by 204 nucleotidesRS_RS04625 and RS_RS04630 are separated by 119 nucleotidesRS_RS04630 and RS_RS04635 are separated by 182 nucleotides RS_RS04615: RS_RS04615 - radical SAM protein, at 980,326 to 981,453 _RS04615 RS_RS04620: RS_RS04620 - NINE protein, at 981,455 to 981,910 _RS04620 RS_RS04625: RS_RS04625 - hypothetical protein, at 982,115 to 982,297 _RS04625 RS_RS04630: RS_RS04630 - hypothetical protein, at 982,417 to 982,821 _RS04630 RS_RS04635: RS_RS04635 - sorbosone dehydrogenase, at 983,004 to 984,077 _RS04635 Position (kb) 982 983Strain fitness (log2 ratio) -1 0 1at 981.573 kb on - strand, within RS_RS04620at 981.651 kb on + strand, within RS_RS04620at 981.652 kb on - strand, within RS_RS04620at 981.822 kb on + strand, within RS_RS04620at 981.904 kb on + strandat 981.904 kb on + strandat 981.904 kb on + strandat 981.904 kb on + strandat 981.904 kb on + strandat 981.904 kb on + strandat 981.905 kb on - strandat 981.957 kb on + strandat 982.051 kb on - strandat 982.117 kb on - strandat 982.348 kb on + strandat 982.349 kb on - strandat 982.349 kb on - strandat 982.920 kb on + strandat 982.921 kb on - strandat 982.921 kb on - strandat 982.921 kb on - strandat 983.176 kb on - strand, within RS_RS04635at 983.281 kb on + strand, within RS_RS04635at 983.338 kb on + strand, within RS_RS04635at 983.338 kb on + strand, within RS_RS04635at 983.341 kb on - strand, within RS_RS04635at 983.602 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.653 kb on + strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.654 kb on - strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.803 kb on + strand, within RS_RS04635at 983.804 kb on - strand, within RS_RS04635

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
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981,573 - RS_RS04620 0.26 -0.4
981,651 + RS_RS04620 0.43 -0.2
981,652 - RS_RS04620 0.43 +1.4
981,822 + RS_RS04620 0.80 +1.0
981,904 + -0.3
981,904 + -1.1
981,904 + -0.6
981,904 + -0.4
981,904 + -0.1
981,904 + +1.4
981,905 - +0.2
981,957 + -0.1
982,051 - +0.1
982,117 - -0.6
982,348 + +0.3
982,349 - -0.0
982,349 - -1.0
982,920 + -0.1
982,921 - +0.0
982,921 - +0.4
982,921 - +0.4
983,176 - RS_RS04635 0.16 -0.0
983,281 + RS_RS04635 0.26 -0.6
983,338 + RS_RS04635 0.31 -0.3
983,338 + RS_RS04635 0.31 +1.4
983,341 - RS_RS04635 0.31 +0.2
983,602 + RS_RS04635 0.56 -0.2
983,653 + RS_RS04635 0.60 +0.4
983,653 + RS_RS04635 0.60 -0.2
983,653 + RS_RS04635 0.60 -0.1
983,653 + RS_RS04635 0.60 +0.0
983,653 + RS_RS04635 0.60 -0.2
983,653 + RS_RS04635 0.60 -1.6
983,654 - RS_RS04635 0.61 -1.4
983,654 - RS_RS04635 0.61 -0.4
983,654 - RS_RS04635 0.61 -0.7
983,654 - RS_RS04635 0.61 -1.1
983,654 - RS_RS04635 0.61 -1.7
983,654 - RS_RS04635 0.61 -0.6
983,654 - RS_RS04635 0.61 -0.7
983,654 - RS_RS04635 0.61 +1.4
983,803 + RS_RS04635 0.74 +0.0
983,803 + RS_RS04635 0.74 -0.5
983,803 + RS_RS04635 0.74 +1.4
983,803 + RS_RS04635 0.74 -0.5
983,803 + RS_RS04635 0.74 -1.3
983,803 + RS_RS04635 0.74 +1.4
983,804 - RS_RS04635 0.74 +1.4

Or see this region's nucleotide sequence