Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS21720

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS21705 and RS_RS21710 are separated by 247 nucleotidesRS_RS21710 and RS_RS21715 are separated by 36 nucleotidesRS_RS21715 and RS_RS21720 are separated by 55 nucleotides RS_RS21705: RS_RS21705 - 23S ribosomal RNA, at 1,201,800 to 1,204,692 _RS21705 RS_RS21710: RS_RS21710 - tRNA-Ala, at 1,204,940 to 1,205,015 _RS21710 RS_RS21715: RS_RS21715 - tRNA-Ile, at 1,205,052 to 1,205,128 _RS21715 RS_RS21720: RS_RS21720 - 16S ribosomal RNA, at 1,205,184 to 1,206,728 _RS21720 Position (kb) 1205 1206 1207Strain fitness (log2 ratio) -1 0 1 2at 1206.957 kb on + strandat 1207.036 kb on + strandat 1207.036 kb on + strandat 1207.036 kb on + strandat 1207.094 kb on + strandat 1207.094 kb on - strandat 1207.094 kb on - strandat 1207.162 kb on + strandat 1207.162 kb on + strandat 1207.162 kb on + strandat 1207.162 kb on + strandat 1207.163 kb on - strandat 1207.163 kb on - strandat 1207.166 kb on - strandat 1207.166 kb on - strandat 1207.189 kb on - strandat 1207.332 kb on - strandat 1207.376 kb on + strandat 1207.377 kb on - strandat 1207.377 kb on - strandat 1207.457 kb on + strandat 1207.458 kb on - strandat 1207.458 kb on - strandat 1207.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
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1,206,957 + -0.7
1,207,036 + -0.2
1,207,036 + -0.3
1,207,036 + -0.2
1,207,094 + -1.0
1,207,094 - +0.6
1,207,094 - -0.0
1,207,162 + +0.5
1,207,162 + -0.3
1,207,162 + +1.0
1,207,162 + -1.6
1,207,163 - -0.2
1,207,163 - -0.2
1,207,166 - -0.1
1,207,166 - -0.3
1,207,189 - -0.8
1,207,332 - +0.3
1,207,376 + -0.0
1,207,377 - +0.2
1,207,377 - +0.0
1,207,457 + +1.0
1,207,458 - -1.6
1,207,458 - +0.1
1,207,661 - +2.0

Or see this region's nucleotide sequence