Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06545

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06540 and RS_RS06545 are separated by 247 nucleotidesRS_RS06545 and RS_RS06550 are separated by 115 nucleotides RS_RS06540: RS_RS06540 - LexA repressor, at 1,391,233 to 1,391,883 _RS06540 RS_RS06545: RS_RS06545 - ferredoxin--NADP reductase, at 1,392,131 to 1,392,907 _RS06545 RS_RS06550: RS_RS06550 - asparaginase, at 1,393,023 to 1,394,018 _RS06550 Position (kb) 1392 1393Strain fitness (log2 ratio) -1 0 1at 1391.175 kb on + strandat 1391.951 kb on - strandat 1392.034 kb on + strandat 1392.035 kb on - strandat 1392.905 kb on + strandat 1392.985 kb on - strandat 1393.539 kb on + strand, within RS_RS06550at 1393.539 kb on + strand, within RS_RS06550at 1393.699 kb on - strand, within RS_RS06550at 1393.699 kb on - strand, within RS_RS06550

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
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1,391,175 + -0.4
1,391,951 - +0.5
1,392,034 + -0.1
1,392,035 - -0.6
1,392,905 + -0.8
1,392,985 - +0.6
1,393,539 + RS_RS06550 0.52 -0.6
1,393,539 + RS_RS06550 0.52 +0.2
1,393,699 - RS_RS06550 0.68 -1.1
1,393,699 - RS_RS06550 0.68 -0.5

Or see this region's nucleotide sequence