Experiment: SMSA no antibiotic control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03895 and RS_RS03900 are separated by 104 nucleotides RS_RS03900 and RS_RS03905 are separated by 253 nucleotides RS_RS03905 and RS_RS03910 are separated by 84 nucleotides
RS_RS03895: RS_RS03895 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 818,883 to 819,785
_RS03895
RS_RS03900: RS_RS03900 - catalase/peroxidase HPI, at 819,890 to 822,063
_RS03900
RS_RS03905: RS_RS03905 - hemerythrin, at 822,317 to 822,730
_RS03905
RS_RS03910: RS_RS03910 - DsbA family protein, at 822,815 to 823,480
_RS03910
Position (kb) 819
820
821
822
823 Strain fitness (log2 ratio) -1
0
1
2 at 818.938 kb on - strand at 819.283 kb on - strand, within RS_RS03895 at 819.525 kb on + strand, within RS_RS03895 at 819.891 kb on + strand at 820.308 kb on + strand, within RS_RS03900 at 820.308 kb on + strand, within RS_RS03900 at 820.308 kb on + strand, within RS_RS03900 at 820.308 kb on + strand, within RS_RS03900 at 820.309 kb on - strand, within RS_RS03900 at 820.323 kb on + strand, within RS_RS03900 at 820.324 kb on - strand, within RS_RS03900 at 820.817 kb on + strand, within RS_RS03900 at 820.917 kb on + strand, within RS_RS03900 at 820.918 kb on - strand, within RS_RS03900 at 821.420 kb on + strand, within RS_RS03900 at 821.421 kb on - strand, within RS_RS03900 at 821.421 kb on - strand, within RS_RS03900 at 821.516 kb on + strand, within RS_RS03900 at 821.516 kb on + strand, within RS_RS03900 at 821.539 kb on + strand, within RS_RS03900 at 821.540 kb on - strand, within RS_RS03900 at 821.540 kb on - strand, within RS_RS03900 at 821.540 kb on - strand, within RS_RS03900 at 821.646 kb on - strand, within RS_RS03900 at 821.646 kb on - strand, within RS_RS03900 at 821.770 kb on + strand, within RS_RS03900 at 821.771 kb on + strand, within RS_RS03900 at 821.919 kb on - strand at 822.010 kb on + strand at 822.011 kb on - strand at 822.115 kb on + strand at 822.116 kb on - strand at 822.148 kb on + strand at 822.148 kb on + strand at 822.148 kb on + strand at 822.149 kb on - strand at 822.740 kb on + strand at 822.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction SMSA no antibiotic control remove 818,938 - -0.5 819,283 - RS_RS03895 0.44 -0.7 819,525 + RS_RS03895 0.71 +0.1 819,891 + +2.2 820,308 + RS_RS03900 0.19 -1.1 820,308 + RS_RS03900 0.19 -0.1 820,308 + RS_RS03900 0.19 +0.5 820,308 + RS_RS03900 0.19 -0.2 820,309 - RS_RS03900 0.19 -0.8 820,323 + RS_RS03900 0.20 -0.4 820,324 - RS_RS03900 0.20 -0.9 820,817 + RS_RS03900 0.43 +1.2 820,917 + RS_RS03900 0.47 -0.2 820,918 - RS_RS03900 0.47 -0.8 821,420 + RS_RS03900 0.70 -0.9 821,421 - RS_RS03900 0.70 +0.2 821,421 - RS_RS03900 0.70 -1.4 821,516 + RS_RS03900 0.75 +0.4 821,516 + RS_RS03900 0.75 -0.4 821,539 + RS_RS03900 0.76 +0.4 821,540 - RS_RS03900 0.76 +1.0 821,540 - RS_RS03900 0.76 -0.0 821,540 - RS_RS03900 0.76 -0.7 821,646 - RS_RS03900 0.81 +0.5 821,646 - RS_RS03900 0.81 +0.0 821,770 + RS_RS03900 0.86 +0.5 821,771 + RS_RS03900 0.87 +0.7 821,919 - +0.4 822,010 + +1.8 822,011 - -0.4 822,115 + -0.4 822,116 - +0.1 822,148 + -1.0 822,148 + +1.2 822,148 + -0.4 822,149 - -0.1 822,740 + -0.1 822,868 - -0.3
Or see this region's nucleotide sequence